Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MHI23_RS07870 Genome accession   NZ_CP152024
Coordinates   1549798..1550700 (+) Length   300 a.a.
NCBI ID   WP_342492424.1    Uniprot ID   -
Organism   Bacillus sp. FSL M7-0003     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1544798..1555700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI23_RS07850 (MHI23_07850) - 1545464..1547200 (+) 1737 WP_342492423.1 glycosyltransferase -
  MHI23_RS07855 (MHI23_07855) - 1547197..1547472 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  MHI23_RS07860 (MHI23_07860) sucC 1547649..1548809 (+) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  MHI23_RS07865 (MHI23_07865) sucD 1548832..1549734 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  MHI23_RS07870 (MHI23_07870) dprA 1549798..1550700 (+) 903 WP_342492424.1 DNA-processing protein DprA Machinery gene
  MHI23_RS07875 (MHI23_07875) topA 1550894..1552969 (+) 2076 WP_342492425.1 type I DNA topoisomerase -
  MHI23_RS07880 (MHI23_07880) trmFO 1553040..1554344 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MHI23_RS07885 (MHI23_07885) xerC 1554407..1555324 (+) 918 WP_024424182.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34146.53 Da        Isoelectric Point: 8.8626

>NTDB_id=985445 MHI23_RS07870 WP_342492424.1 1549798..1550700(+) (dprA) [Bacillus sp. FSL M7-0003]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRALQTIDFTRLKQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKEEWMIVSGLAKGIDGLAH
KECIRKKGKTIGIIAGGFQHVYPKEHAQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDYNSTGPARLIQQGAKLVHSTKDILEEFSFHSVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=985445 MHI23_RS07870 WP_342492424.1 1549798..1550700(+) (dprA) [Bacillus sp. FSL M7-0003]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCATTATTAACAAAATGGTGGAA
AGTCGATCCTGAACTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGAGCATTACAAACGATCGACTTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACACTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTCGGCACGCGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTCAAGGAAGAGTGGATGATTGTCAGTGGTTTAGCTAAAGGAATCGATGGACTGGCACAT
AAAGAGTGCATCAGGAAAAAAGGGAAAACAATCGGCATTATAGCAGGCGGCTTTCAGCATGTATACCCAAAAGAACATGC
GCAAATGGCTCAATACATGGGTGAACATCATTTGCTTTTGTCAGAGCACCCGCCTTATGTCAAACCAGAAAAGTGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCATTGACGAAAGGGACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCTCTT
ATTACAGCCTATCAAGCACTTGAGCAAGGCAAAGAAGTATTTGCGGTTGCTGGATCCATCTTTGATTATAATTCCACAGG
TCCGGCAAGACTCATTCAGCAGGGGGCAAAGCTTGTTCATTCCACAAAGGATATTTTAGAGGAATTCTCCTTCCACAGCG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.355

95.667

0.52
  dprA Legionella pneumophila strain ERS1305867

37.705

100

0.383

Multiple sequence alignment