Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MHI41_RS11690 Genome accession   NZ_CP152023
Coordinates   2284236..2285006 (-) Length   256 a.a.
NCBI ID   WP_007501304.1    Uniprot ID   -
Organism   Bacillus sp. FSL M7-0307     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2279236..2290006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI41_RS11670 (MHI41_11670) - 2279329..2280150 (-) 822 WP_108611178.1 pyruvate, water dikinase regulatory protein -
  MHI41_RS11675 (MHI41_11675) - 2280176..2280814 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  MHI41_RS11680 (MHI41_11680) glyS 2280981..2283026 (-) 2046 WP_046344006.1 glycine--tRNA ligase subunit beta -
  MHI41_RS11685 (MHI41_11685) glyQ 2283019..2283906 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  MHI41_RS11690 (MHI41_11690) recO 2284236..2285006 (-) 771 WP_007501304.1 DNA repair protein RecO Machinery gene
  MHI41_RS11695 (MHI41_11695) - 2285042..2285185 (-) 144 WP_008342408.1 YqzL family protein -
  MHI41_RS11700 (MHI41_11700) era 2285333..2286238 (-) 906 WP_007501305.1 GTPase Era -
  MHI41_RS11705 (MHI41_11705) - 2286231..2286629 (-) 399 WP_008342410.1 cytidine deaminase -
  MHI41_RS11710 (MHI41_11710) - 2286742..2287128 (-) 387 WP_008342413.1 diacylglycerol kinase family protein -
  MHI41_RS11715 (MHI41_11715) ybeY 2287106..2287585 (-) 480 WP_017358013.1 rRNA maturation RNase YbeY -
  MHI41_RS11720 (MHI41_11720) - 2287586..2289676 (-) 2091 WP_173408463.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29345.04 Da        Isoelectric Point: 8.4348

>NTDB_id=985396 MHI41_RS11690 WP_007501304.1 2284236..2285006(-) (recO) [Bacillus sp. FSL M7-0307]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGLKPELDQCVHCGQKEG
QFHFSIRDNGFICRQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=985396 MHI41_RS11690 WP_007501304.1 2284236..2285006(-) (recO) [Bacillus sp. FSL M7-0307]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTTCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGGACC
ATTCGGGAAGATTTATTTCTGACCGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGCTCTCAGTGATGGGGTTGAAGCCTGAACTGGACCAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATTAGAGATAACGGATTCATCTGTAGGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAAA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758

Multiple sequence alignment