Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MHI41_RS10205 Genome accession   NZ_CP152023
Coordinates   2019846..2020481 (+) Length   211 a.a.
NCBI ID   WP_035391682.1    Uniprot ID   -
Organism   Bacillus sp. FSL M7-0307     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2014846..2025481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI41_RS10165 (MHI41_10165) - 2015008..2016126 (+) 1119 WP_231131592.1 NADH-dependent flavin oxidoreductase -
  MHI41_RS10170 (MHI41_10170) - 2016176..2016682 (-) 507 WP_065460619.1 PTS glucose transporter subunit IIA -
  MHI41_RS10175 (MHI41_10175) - 2016853..2017272 (+) 420 WP_073414769.1 Hsp20/alpha crystallin family protein -
  MHI41_RS10180 (MHI41_10180) - 2017294..2017746 (-) 453 WP_017359729.1 YppG family protein -
  MHI41_RS10185 (MHI41_10185) - 2017855..2018226 (-) 372 WP_017359730.1 YppE family protein -
  MHI41_RS10190 (MHI41_10190) - 2018285..2018518 (-) 234 WP_234717153.1 DUF5446 family protein -
  MHI41_RS10195 (MHI41_10195) sspM 2018715..2018819 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  MHI41_RS10200 (MHI41_10200) - 2018843..2019799 (-) 957 WP_035391684.1 DUF2515 domain-containing protein -
  MHI41_RS10205 (MHI41_10205) recU 2019846..2020481 (+) 636 WP_035391682.1 Holliday junction resolvase RecU Machinery gene
  MHI41_RS10210 (MHI41_10210) - 2020501..2023191 (+) 2691 WP_342494175.1 PBP1A family penicillin-binding protein -
  MHI41_RS10215 (MHI41_10215) - 2023227..2023736 (-) 510 WP_342494176.1 YpoC family protein -
  MHI41_RS10220 (MHI41_10220) nth 2023733..2024395 (-) 663 WP_008344602.1 endonuclease III -
  MHI41_RS10225 (MHI41_10225) - 2024413..2025117 (-) 705 WP_017367489.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24323.61 Da        Isoelectric Point: 9.6582

>NTDB_id=985390 MHI41_RS10205 WP_035391682.1 2019846..2020481(+) (recU) [Bacillus sp. FSL M7-0307]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSASDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDESKHHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=985390 MHI41_RS10205 WP_035391682.1 2019846..2020481(+) (recU) [Bacillus sp. FSL M7-0307]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTTCTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGCCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGCATCATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697

Multiple sequence alignment