Detailed information NTG0985385

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACN9LE_RS07640
• Genome accession: NZ_CP184118
• Coordinates: 1544364..1545356 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC-16-526
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1539364..1550356

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACN9LE_RS07620 (ACN9LE_07620)	ygbM	1540002..1540778 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
ACN9LE_RS07625 (ACN9LE_07625)	ygbN	1540867..1542231 (+)	1365	WP_000104433.1	GntP family transporter	-
ACN9LE_RS07630 (ACN9LE_07630)	-	1542374..1543417 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
ACN9LE_RS07635 (ACN9LE_07635)	-	1543642..1544193 (+)	552	WP_001179444.1	flavodoxin family protein	-
ACN9LE_RS07640 (ACN9LE_07640)	rpoS	1544364..1545356 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACN9LE_RS07645 (ACN9LE_07645)	nlpD	1545419..1546513 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
ACN9LE_RS07650 (ACN9LE_07650)	pcm	1546698..1547324 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACN9LE_RS07655 (ACN9LE_07655)	surE	1547318..1548079 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACN9LE_RS07660 (ACN9LE_07660)	truD	1548060..1549109 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
ACN9LE_RS07665 (ACN9LE_07665)	ispF	1549106..1549585 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACN9LE_RS07670 (ACN9LE_07670)	ispD	1549585..1550295 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=985385 ACN9LE_RS07640 WP_000081550.1 1544364..1545356(-) (rpoS) [Escherichia coli strain EC-16-526]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=985385 ACN9LE_RS07640 WP_000081550.1 1544364..1545356(-) (rpoS) [Escherichia coli strain EC-16-526]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715