Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MHI08_RS11610 Genome accession   NZ_CP152022
Coordinates   2264342..2265112 (-) Length   256 a.a.
NCBI ID   WP_342499634.1    Uniprot ID   -
Organism   Bacillus sp. FSL M7-0791     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2259342..2270112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI08_RS11590 (MHI08_11590) - 2259434..2260255 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  MHI08_RS11595 (MHI08_11595) - 2260281..2260919 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  MHI08_RS11600 (MHI08_11600) glyS 2261087..2263132 (-) 2046 WP_342499633.1 glycine--tRNA ligase subunit beta -
  MHI08_RS11605 (MHI08_11605) glyQ 2263125..2264012 (-) 888 WP_012010611.1 glycine--tRNA ligase subunit alpha -
  MHI08_RS11610 (MHI08_11610) recO 2264342..2265112 (-) 771 WP_342499634.1 DNA repair protein RecO Machinery gene
  MHI08_RS11615 (MHI08_11615) - 2265148..2265291 (-) 144 WP_003217288.1 YqzL family protein -
  MHI08_RS11620 (MHI08_11620) era 2265440..2266345 (-) 906 WP_007501305.1 GTPase Era -
  MHI08_RS11625 (MHI08_11625) - 2266338..2266736 (-) 399 WP_008356263.1 cytidine deaminase -
  MHI08_RS11630 (MHI08_11630) - 2266850..2267236 (-) 387 WP_024423020.1 diacylglycerol kinase family protein -
  MHI08_RS11635 (MHI08_11635) ybeY 2267214..2267693 (-) 480 WP_024423021.1 rRNA maturation RNase YbeY -
  MHI08_RS11640 (MHI08_11640) - 2267694..2269808 (-) 2115 WP_164512169.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29254.91 Da        Isoelectric Point: 7.7017

>NTDB_id=985335 MHI08_RS11610 WP_342499634.1 2264342..2265112(-) (recO) [Bacillus sp. FSL M7-0791]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRA
IREDLFLTAYAAYMTELMDKGTEEKKPNPYLFELLLQSLCHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKQQTKQEIRQVLDHYYDEYSGLYLKSKKFM
NQMESMKKLMGDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=985335 MHI08_RS11610 WP_342499634.1 2264342..2265112(-) (recO) [Bacillus sp. FSL M7-0791]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGAAAAATTGGCGTGATGGCCAGAGGCGCTAAAAAATCAAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGCACCTTTCTCATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGGGCC
ATTCGGGAAGACTTATTTCTGACCGCATATGCCGCATATATGACGGAATTGATGGATAAAGGGACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTTCTGCTTCAATCTCTGTGTCATCTCAACGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTGATGGGGATGAAGCCTGAACTTGATCAATGTGTCCACTGTGGTCAAAAAGAAGGG
CAGTTCCATTTCTCGATAAGAGATAACGGCTTCATTTGCCAAAATTGTTTTTCGAAAGATCCATATAAACTGCCCTTATC
CCCCGCAGCTGCAAGGCTGCTCCGATTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGATGTGAAACAGCAGA
CGAAACAAGAAATTCGTCAAGTGCTTGATCACTACTATGACGAATATTCCGGCCTCTATTTAAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTAATGGGTGACGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.391

100

0.754

Multiple sequence alignment