Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   MHI08_RS06455 Genome accession   NZ_CP152022
Coordinates   1273981..1276083 (-) Length   700 a.a.
NCBI ID   WP_342500091.1    Uniprot ID   -
Organism   Bacillus sp. FSL M7-0791     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1268981..1281083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI08_RS06430 (MHI08_06430) - 1269397..1269639 (+) 243 WP_024424676.1 aspartyl-phosphate phosphatase Spo0E family protein -
  MHI08_RS06435 (MHI08_06435) - 1269686..1271191 (-) 1506 WP_342500090.1 ATP-binding protein -
  MHI08_RS06440 (MHI08_06440) - 1271396..1271851 (+) 456 WP_024424678.1 MarR family transcriptional regulator -
  MHI08_RS06445 (MHI08_06445) motB 1272044..1272814 (-) 771 WP_024424679.1 flagellar motor protein MotB -
  MHI08_RS06450 (MHI08_06450) motA 1272807..1273601 (-) 795 WP_024424680.1 flagellar motor stator protein MotA -
  MHI08_RS06455 (MHI08_06455) clpC 1273981..1276083 (-) 2103 WP_342500091.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  MHI08_RS06460 (MHI08_06460) - 1276328..1277371 (+) 1044 WP_342500092.1 hypothetical protein -
  MHI08_RS06465 (MHI08_06465) queC 1277646..1278302 (+) 657 WP_024424683.1 7-cyano-7-deazaguanine synthase QueC -
  MHI08_RS06470 (MHI08_06470) queD 1278303..1278743 (+) 441 WP_056766295.1 6-carboxytetrahydropterin synthase QueD -
  MHI08_RS06475 (MHI08_06475) queE 1278736..1279467 (+) 732 WP_056766298.1 7-carboxy-7-deazaguanine synthase QueE -
  MHI08_RS06480 (MHI08_06480) queF 1279483..1279980 (+) 498 WP_024426839.1 preQ(1) synthase -
  MHI08_RS06485 (MHI08_06485) - 1280412..1280774 (-) 363 WP_034667321.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 77865.45 Da        Isoelectric Point: 5.0332

>NTDB_id=985320 MHI08_RS06455 WP_342500091.1 1273981..1276083(-) (clpC) [Bacillus sp. FSL M7-0791]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLIEQSKMKMGPQLFGGSSFFSQAAGHAPNMEQPKQKGLLDELGRN
LTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGVRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAIDILKGIQDKYEAYHGVTYSDEAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAG
EDELTNRLAQIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQNKTTEKEHIVTAEDIQAIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVDKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHIFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGTADKTVKVGFQSDQEEAIEEQSLIDSLSSYFKPEFLNRFDSIIQFESLDRDDLVKIVDLLLNELSEQLKEQNLTVHVT
NEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEQLSGFTVDVEHDEIVVKKG

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=985320 MHI08_RS06455 WP_342500091.1 1273981..1276083(-) (clpC) [Bacillus sp. FSL M7-0791]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTAAATTCGTCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTATACCTCTTTGATAGAGCAGTCAAAAATGAAAATGGGACCTCAGCTCTTTGGAGGAAGTTCAT
TCTTCTCTCAGGCAGCAGGTCATGCCCCAAACATGGAGCAGCCAAAGCAAAAAGGCTTACTCGATGAGCTTGGCCGTAAC
TTAACAGATGGAGCAAATGCTGGTTTAATTGATCCAGTCATTGGCCGTGATGAAGAAGTCGCAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAATAACCCTGTTCTTATTGGTGAACCAGGTGTTGGGAAAACAGCGATCGCAGAAGGACTCGCGC
TCAAAATTGCGAGTGGCGATGTGCCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTCTCCTCACTTGTCGCA
AACACAGGTGTACGCGGTCAATTTGAGGAAAGAATGAAGCAGTTAATCAAAGAACTACAAAGCCGTAAAAATATCATCTT
ATTTGTAGATGAAATCCACCTTCTTGTGGGCGCAGGATCTGCAGAAGGATCAATGGATGCTGGAAACATTTTAAAACCAG
CCCTTGCAAGAGGCGAACTGCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGCCAAATTGAAAAAGATGCTGCACTC
GAACGGCGCTTCCAGCCCGTCATCGTAGATGAGCCAACACAAGATGAAGCGATCGACATCTTAAAAGGCATCCAAGATAA
GTACGAGGCCTATCATGGTGTCACCTATTCAGATGAAGCAATTAAAGCGTGCGTTCAACTATCTTCGCGGTATATTCAAG
ACCGTCATTTGCCGGATAAAGCCATTGATTTAATGGACGAAGCTGGTTCAAAAGCGAACCTCTCCATTGATGCAGCAGGT
GAAGATGAACTGACAAACCGACTAGCGCAAATTGCCGCAGAAAAACAAGCTGCGCTAAAAGAAGAACAATATGAAAAAGC
AGCGAAGCTTCGCGATGAAGAAGAAGCCATTGAAGCAAGACTTCAAAACAAAACAACTGAAAAAGAGCATATCGTTACAG
CAGAGGACATTCAGGCCATTGTGGAACAAAAAACAGGCATTCCTGTCGGTAAACTGCAAGCAGACGAACAAACCAAAATG
AAAGAAATTGACGTCCGTCTAAAAGCACGAGTGATTGGACAGGAGCATGCGGTTGATAAAGTGGCGAAAGCCGTGAAAAG
AAGCAGAGCTGGTTTAAAATCGAAACATAGACCAACAGGCTCCTTCCTTTTCGTTGGACCAACAGGTGTCGGGAAAACCG
AATTGTCTAAAACGTTAGCTGAAGAATTATTCGGTTCAAGAGATGCGATCATTCGTTTAGATATGAGTGAGTACATGGAA
AAACACTCTGTGTCCAAACTCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCTGGCCAACTGACTGAAAAAGT
GCGCAGAAAACCATACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACACCCAGATGTACAGCACATCTTCCTGCAAA
TTATGGAAGATGGCCGCTTAACAGACAGCCAAGGCAGAACGGTCAGCTTTAAAGATACAGTCATCATCATGACAAGTAAC
GCAGGCACCGCAGATAAAACAGTCAAAGTGGGCTTCCAATCTGATCAGGAAGAAGCGATTGAGGAACAATCACTCATTGA
TTCACTGAGCAGCTACTTCAAACCAGAATTTTTGAACCGTTTTGACAGCATCATTCAGTTTGAATCATTAGACAGAGATG
ATTTAGTGAAGATTGTTGATCTTCTGCTCAATGAGCTGTCAGAGCAATTAAAAGAGCAAAATTTAACAGTCCATGTCACA
AATGAAGCGAAAGAAAAAATCGCAGAGCTTGGATATCACCCTGCATTTGGTGCTCGTCCACTTCGAAGAACCATCCAAGA
GCACGTTGAAGACCAAATGACGGAGATCCTGCTTGAAGAGGAGCAGCTTTCTGGATTTACTGTGGATGTTGAACATGACG
AAATCGTCGTAAAAAAAGGATAA

Domains

Predicted by InterproScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)

AAA lid domain (AAA_lid_9)

(253-353)

AAA domain (Cdc48 subfamily) (AAA_2)

(437-604)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(610-687)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.911

100

0.6
  clpE Streptococcus mutans UA159

56.334

100

0.597
  clpE Streptococcus pneumoniae Rx1

55.525

100

0.574
  clpE Streptococcus pneumoniae D39

55.525

100

0.574
  clpE Streptococcus pneumoniae R6

55.525

100

0.574
  clpE Streptococcus pneumoniae TIGR4

55.525

100

0.574
  clpC Bacillus subtilis subsp. subtilis str. 168

53.881

95.714

0.516
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.086

93.143

0.439
  clpC Streptococcus thermophilus LMD-9

46.285

92.286

0.427
  clpC Streptococcus thermophilus LMG 18311

45.975

92.286

0.424
  clpC Streptococcus mutans UA159

44.172

93.143

0.411
  clpC Streptococcus pneumoniae TIGR4

44.795

90.571

0.406
  clpC Streptococcus pneumoniae Rx1

44.992

89.857

0.404
  clpC Streptococcus pneumoniae D39

44.992

89.857

0.404

Multiple sequence alignment