Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MKY94_RS20510 Genome accession   NZ_CP152021
Coordinates   3993915..3995285 (-) Length   456 a.a.
NCBI ID   WP_144540919.1    Uniprot ID   -
Organism   Psychrobacillus sp. FSL K6-2843     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3988915..4000285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY94_RS20490 (MKY94_20490) gltX 3989728..3991191 (-) 1464 WP_342577751.1 glutamate--tRNA ligase -
  MKY94_RS20495 (MKY94_20495) ispF 3991345..3991824 (-) 480 WP_144540925.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MKY94_RS20500 (MKY94_20500) ispD 3991826..3992518 (-) 693 WP_151112034.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MKY94_RS20505 (MKY94_20505) - 3992583..3993674 (-) 1092 WP_144540921.1 PIN/TRAM domain-containing protein -
  MKY94_RS20510 (MKY94_20510) radA 3993915..3995285 (-) 1371 WP_144540919.1 DNA repair protein RadA Machinery gene
  MKY94_RS20515 (MKY94_20515) - 3995482..3997932 (-) 2451 WP_151112030.1 ATP-dependent Clp protease ATP-binding subunit -
  MKY94_RS20520 (MKY94_20520) - 3997929..3999026 (-) 1098 WP_144540916.1 protein arginine kinase -
  MKY94_RS20525 (MKY94_20525) - 3999016..3999558 (-) 543 WP_151112028.1 UvrB/UvrC motif-containing protein -
  MKY94_RS20530 (MKY94_20530) - 3999574..4000047 (-) 474 WP_144540913.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49981.51 Da        Isoelectric Point: 7.1867

>NTDB_id=985293 MKY94_RS20510 WP_144540919.1 3993915..3995285(-) (radA) [Psychrobacillus sp. FSL K6-2843]
MAKKKTKFMCNSCGYEAAKWMGRCPGCGEWNTMVEEVEVVSKGPRHSFQHSSGVTQKATPIISIETVEEPRVQTDLVELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLANKGERVLYISGEESIRQTKLRAERLGVTSNELYIYSETNLELINE
TIEQVSPRFVIVDSIQTVHHPEVTSAPGSVSQVRESTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHNHRILRSQKNRFGSTNEIAIFEMVQQGLREVLNPSELFLQERSQGAAGSAIVASMEGTRPILVEIQALVTQSSFN
YPKRMATGIDQNRISLLMAVLEKRMGLLLQTQDAYIKVAGGVKLDEPAIDLAVLVSIVSSFRDTGAAPTDCFIGEVGLTG
EVRRVSRIEQRVQEAAKLGFKRAIIPASNMGGWDYPKGLQVIGVESVNQVMKEAFS

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=985293 MKY94_RS20510 WP_144540919.1 3993915..3995285(-) (radA) [Psychrobacillus sp. FSL K6-2843]
ATGGCTAAAAAGAAAACAAAATTTATGTGTAACTCTTGCGGCTACGAGGCTGCCAAATGGATGGGTAGATGTCCGGGGTG
TGGAGAATGGAACACTATGGTGGAAGAGGTAGAGGTAGTCTCTAAGGGACCTAGACATTCTTTTCAGCATTCGTCTGGAG
TCACTCAAAAAGCAACCCCAATCATATCCATTGAAACAGTCGAGGAACCACGTGTACAAACTGATTTAGTAGAATTGAAT
CGTGTATTAGGCGGAGGAATTGTGCCAGGCTCCCTAGTTTTAATTGGGGGAGATCCAGGTATAGGTAAATCAACGCTTCT
TTTACAAGTTTCTGCGCTTCTTGCGAATAAAGGGGAAAGAGTACTATATATATCAGGAGAAGAATCAATCCGCCAGACAA
AACTCCGAGCGGAACGTTTAGGAGTCACTTCAAATGAACTTTATATTTATTCGGAAACCAATTTAGAGCTGATCAATGAA
ACGATTGAACAAGTAAGCCCACGGTTTGTAATAGTGGATTCTATCCAAACGGTTCATCATCCAGAGGTAACAAGTGCCCC
AGGTAGTGTATCCCAAGTGCGTGAAAGTACAGCTGAGCTAATGCGGATTGCGAAAACTAAAAATATTGCCATTTTCTTGG
TGGGACATGTAACTAAGGAAGGCCAAATTGCTGGTCCAAGAATACTCGAGCATATGGTAGATACTGTTTTATACTTTGAG
GGAGAACGTCATCATAATCATCGCATATTGCGATCACAAAAAAATAGATTTGGTTCTACCAATGAGATTGCTATTTTTGA
GATGGTGCAACAGGGTTTAAGGGAAGTACTTAACCCATCTGAATTATTTTTACAGGAGCGTTCCCAGGGAGCGGCTGGAT
CTGCCATTGTTGCCTCAATGGAAGGGACAAGACCGATTTTAGTAGAGATTCAAGCGCTTGTGACACAATCGAGCTTTAAT
TATCCAAAAAGGATGGCCACAGGGATTGATCAAAATCGAATTTCTTTATTAATGGCCGTGCTAGAAAAACGCATGGGACT
GCTACTTCAAACGCAGGATGCCTACATAAAAGTTGCCGGTGGAGTAAAATTAGACGAACCTGCCATCGATTTAGCCGTCC
TAGTAAGTATCGTATCTAGTTTTAGAGATACGGGTGCTGCTCCAACCGACTGTTTTATAGGTGAGGTAGGATTAACAGGA
GAAGTAAGAAGAGTATCTAGGATTGAACAAAGAGTGCAAGAGGCAGCTAAGCTAGGCTTTAAACGAGCAATTATCCCTGC
ATCTAATATGGGGGGCTGGGATTATCCGAAGGGTCTGCAGGTTATTGGAGTAGAGTCTGTAAACCAGGTGATGAAAGAAG
CCTTTTCATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

AAA domain (AAA_25)

(72-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

71.397

100

0.717
  radA Streptococcus pneumoniae Rx1

61.926

100

0.621
  radA Streptococcus pneumoniae D39

61.926

100

0.621
  radA Streptococcus pneumoniae R6

61.926

100

0.621
  radA Streptococcus pneumoniae TIGR4

61.926

100

0.621
  radA Streptococcus mitis NCTC 12261

61.926

100

0.621
  radA Streptococcus mitis SK321

61.707

100

0.618

Multiple sequence alignment