Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MKY94_RS11630 Genome accession   NZ_CP152021
Coordinates   2301158..2302861 (-) Length   567 a.a.
NCBI ID   WP_144537153.1    Uniprot ID   -
Organism   Psychrobacillus sp. FSL K6-2843     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2296158..2307861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY94_RS11610 (MKY94_11610) - 2296247..2296966 (-) 720 WP_144536050.1 glycerophosphodiester phosphodiesterase family protein -
  MKY94_RS11615 (MKY94_11615) - 2296959..2298530 (-) 1572 WP_144536048.1 FapA family protein -
  MKY94_RS11620 (MKY94_11620) spo0A 2299051..2299842 (-) 792 WP_144536046.1 sporulation transcription factor Spo0A -
  MKY94_RS11625 (MKY94_11625) - 2300106..2301062 (-) 957 WP_144536044.1 SpoIVB peptidase S55 domain-containing protein -
  MKY94_RS11630 (MKY94_11630) recN 2301158..2302861 (-) 1704 WP_144537153.1 DNA repair protein RecN Machinery gene
  MKY94_RS11635 (MKY94_11635) argR 2302942..2303391 (-) 450 WP_144536042.1 transcriptional regulator ArgR -
  MKY94_RS11640 (MKY94_11640) - 2303490..2304308 (-) 819 WP_144536040.1 TlyA family RNA methyltransferase -
  MKY94_RS11645 (MKY94_11645) dxs 2304305..2306200 (-) 1896 WP_340844481.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MKY94_RS11650 (MKY94_11650) - 2306290..2307171 (-) 882 WP_144536026.1 polyprenyl synthetase family protein -
  MKY94_RS11655 (MKY94_11655) xseB 2307164..2307385 (-) 222 WP_144536024.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 63881.69 Da        Isoelectric Point: 4.8661

>NTDB_id=985281 MKY94_RS11630 WP_144537153.1 2301158..2302861(-) (recN) [Psychrobacillus sp. FSL K6-2843]
MLKELSIKNFAIIDELTVSFEEGLTVLTGETGAGKSIIIDAVHLLCGGRGSQEFIRHGAKKAELEGLFIISDPKHSVFKK
MLDVGIDKDEETIILRRDINESGKSVCRVNGKLVTIGILREIGASLIDIHGQHESQELMDDKAHIHLLDQFAGDDLKAVK
EAYRELFSKYKKWKKELATLTENEQQIAHKIDLYTFQVEEIDEAQLKRGEEESLQNEKKKLLNFHKMFDKISSSYDAILG
ESKGLDYIGSAMSDLQDISDVDENMKDLSESVSSAFYILQDAAHQLKNDLDEMEYDSNQLQIVEDRLALIQTLKRKYGAS
IEEILEYKEQIQHSLDQLVNRDEQIQKMAEKIRQIEIDLQLEANELTDKRKAASSLLSSAIMEQLQELYMEKATFAVMFH
DHPNPIYNEDGIDDLSFYISTNVGEPLKALTKIASGGELSRMMLALKSIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKI
AGIATNSQVLCISHLSQVAAMADQHLLIRKEVSGNRTYTLLEEITDDQRAEELSRMMSGTEITTTTLKHSKELLKIANER
KKVLRNS

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=985281 MKY94_RS11630 WP_144537153.1 2301158..2302861(-) (recN) [Psychrobacillus sp. FSL K6-2843]
TTGTTAAAAGAACTTTCCATTAAAAATTTTGCGATAATAGATGAACTTACTGTAAGCTTTGAAGAAGGTTTAACTGTGCT
AACTGGTGAAACTGGGGCTGGAAAATCAATCATTATTGATGCGGTTCATCTGCTTTGCGGAGGTAGAGGATCACAGGAAT
TTATTCGACATGGCGCAAAAAAGGCAGAGCTAGAGGGACTATTTATCATTTCAGATCCAAAGCATAGCGTTTTTAAGAAA
ATGCTAGATGTTGGTATTGATAAAGATGAGGAAACAATCATTTTGAGAAGAGATATAAATGAGTCTGGAAAAAGCGTCTG
TAGAGTAAATGGGAAACTTGTAACAATTGGTATTTTAAGAGAAATTGGTGCCAGTTTAATAGATATCCATGGTCAGCATG
AAAGCCAAGAGCTAATGGATGACAAGGCACATATTCACTTGCTTGACCAATTTGCTGGAGACGACCTGAAGGCAGTAAAA
GAAGCGTATAGGGAATTATTTAGTAAATACAAAAAATGGAAAAAAGAATTGGCTACATTGACGGAAAATGAGCAGCAAAT
TGCCCATAAAATTGACCTGTACACATTTCAAGTAGAAGAAATTGATGAAGCTCAATTAAAAAGAGGAGAAGAAGAATCTC
TTCAGAATGAAAAGAAAAAGCTATTAAACTTTCATAAAATGTTTGATAAAATCAGCAGCTCATATGATGCTATTTTAGGA
GAATCTAAAGGATTAGACTATATAGGTTCTGCTATGTCTGATTTACAAGATATTTCGGATGTAGACGAGAATATGAAGGA
TTTAAGCGAAAGCGTTTCTTCGGCATTTTATATATTGCAGGACGCAGCACATCAACTTAAAAATGATTTAGATGAAATGG
AGTATGACAGCAATCAACTTCAAATTGTAGAAGATCGATTGGCTTTAATACAGACTTTAAAAAGAAAATATGGAGCCTCG
ATTGAAGAAATTCTTGAATACAAAGAACAGATTCAACATAGCTTGGACCAATTAGTCAATCGAGATGAACAAATTCAAAA
AATGGCAGAAAAAATACGTCAAATTGAAATAGATCTTCAGCTAGAGGCTAACGAGTTAACCGACAAACGGAAGGCCGCAT
CTTCCTTGTTGAGTAGCGCTATTATGGAGCAGCTTCAGGAGCTTTATATGGAAAAAGCAACTTTTGCTGTTATGTTCCAT
GATCATCCTAATCCTATCTATAATGAAGATGGTATAGACGATTTATCCTTTTATATATCTACAAACGTTGGTGAACCGTT
AAAGGCTTTAACTAAAATTGCTTCAGGTGGCGAATTATCTAGAATGATGCTTGCTTTAAAAAGTATTTTTTCGAAGCATC
AAGGCATTACCTCTATTATTTTTGATGAGGTAGATACTGGTGTGAGCGGCCGAGTTGCCCAAGCGATTGCTGAAAAAATT
GCGGGCATTGCGACAAATTCACAAGTTTTGTGTATATCTCATCTTTCCCAAGTTGCAGCGATGGCTGACCAGCATTTATT
GATTAGAAAAGAAGTTTCTGGAAATCGTACCTATACGTTGCTGGAAGAAATAACGGATGACCAACGTGCCGAGGAATTAA
GCAGAATGATGTCAGGCACGGAAATCACAACTACTACTTTAAAGCACTCCAAAGAATTACTAAAAATTGCAAATGAACGA
AAAAAAGTGTTAAGAAACTCTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.787

100

0.534

Multiple sequence alignment