Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MKY09_RS18575 Genome accession   NZ_CP152020
Coordinates   3754988..3756358 (-) Length   456 a.a.
NCBI ID   WP_169359395.1    Uniprot ID   -
Organism   Psychrobacillus sp. FSL K6-4046     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3749988..3761358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY09_RS18555 (MKY09_18555) gltX 3750817..3752280 (-) 1464 WP_169359391.1 glutamate--tRNA ligase -
  MKY09_RS18560 (MKY09_18560) ispF 3752427..3752906 (-) 480 WP_342560053.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MKY09_RS18565 (MKY09_18565) ispD 3752908..3753600 (-) 693 WP_342567288.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MKY09_RS18570 (MKY09_18570) - 3753667..3754758 (-) 1092 WP_342567289.1 PIN/TRAM domain-containing protein -
  MKY09_RS18575 (MKY09_18575) radA 3754988..3756358 (-) 1371 WP_169359395.1 DNA repair protein RadA Machinery gene
  MKY09_RS18580 (MKY09_18580) - 3756512..3758962 (-) 2451 WP_169359396.1 ATP-dependent Clp protease ATP-binding subunit -
  MKY09_RS18585 (MKY09_18585) - 3758959..3760053 (-) 1095 WP_298474074.1 protein arginine kinase -
  MKY09_RS18590 (MKY09_18590) - 3760043..3760582 (-) 540 WP_169359398.1 UvrB/UvrC motif-containing protein -
  MKY09_RS18595 (MKY09_18595) - 3760599..3761072 (-) 474 WP_169359399.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49979.53 Da        Isoelectric Point: 7.0114

>NTDB_id=985255 MKY09_RS18575 WP_169359395.1 3754988..3756358(-) (radA) [Psychrobacillus sp. FSL K6-4046]
MAKKKTKFMCNSCGYEAAKWMGRCPGCGEWNTMVEEVEVVSKGPRHSFQHSSGVTQKATPIISIETIDEPRVQTDLVELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLANKGERVLYISGEESIRQTKLRAERLGVTSNELYIYSETNLELINE
TIDQVSPRFVIVDSIQTVHHPEVTSAPGSVSQVRESTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHNHRILRSQKNRFGSTNEIAIFEMVQQGLKEVLNPSELFLQERSHGAAGSAIVASMEGTRPILVEIQALVTQSSFN
YPKRMATGIDQNRISLLMAVLEKRMGLLLQTQDAYIKVAGGVKLDEPAIDLAVLVSIVSSFRDIGVASTDCFIGEVGLTG
EVRRVSRIEQRVQEAAKLGFKRAIIPASNMGGWDYPKGLQVIGVESVNEVMKEAFS

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=985255 MKY09_RS18575 WP_169359395.1 3754988..3756358(-) (radA) [Psychrobacillus sp. FSL K6-4046]
ATGGCAAAAAAGAAAACGAAATTTATGTGTAACTCATGTGGCTATGAGGCTGCCAAATGGATGGGTAGATGTCCAGGGTG
TGGAGAATGGAACACGATGGTCGAAGAGGTAGAGGTTGTTTCTAAGGGGCCTAGACATTCTTTTCAGCATTCCTCTGGAG
TCACTCAAAAAGCAACGCCCATTATATCTATTGAAACGATCGATGAGCCTCGTGTACAGACGGATTTAGTAGAATTGAAT
CGGGTCTTAGGTGGAGGAATTGTGCCAGGCTCCCTAGTTTTAATTGGGGGAGATCCAGGTATAGGTAAATCAACGCTTCT
TTTACAAGTTTCTGCACTTCTTGCGAATAAGGGAGAAAGAGTCCTCTACATTTCCGGAGAAGAATCCATCCGCCAGACGA
AACTCCGAGCAGAACGTCTAGGAGTTACTTCAAACGAACTTTATATCTATTCGGAAACTAATCTAGAGCTGATAAATGAA
ACAATCGATCAAGTAAGTCCGCGTTTTGTAATCGTGGATTCTATACAAACTGTGCATCACCCAGAAGTAACGAGTGCACC
AGGTAGCGTGTCTCAAGTACGTGAAAGTACTGCTGAGCTGATGCGTATCGCGAAGACTAAAAATATTGCGATCTTTTTAG
TTGGTCATGTAACTAAAGAAGGCCAAATCGCCGGACCAAGGATCCTTGAGCATATGGTAGATACGGTTTTATATTTTGAG
GGTGAGCGTCATCACAATCATCGTATATTGCGTTCACAAAAAAATAGATTTGGTTCGACTAATGAGATTGCTATTTTTGA
AATGGTACAACAGGGTCTAAAGGAAGTACTGAATCCTTCTGAGTTATTTTTGCAGGAGCGTTCTCATGGAGCAGCAGGCT
CTGCAATCGTCGCGTCTATGGAAGGGACAAGACCGATTTTAGTAGAGATTCAAGCGCTAGTCACACAGTCGAGCTTTAAC
TACCCTAAAAGAATGGCTACAGGGATTGACCAAAATAGAATTTCCTTGTTAATGGCAGTGCTAGAAAAACGCATGGGACT
GCTACTTCAAACACAAGACGCCTATATAAAAGTTGCCGGTGGAGTAAAATTAGACGAACCTGCCATCGATTTAGCCGTCC
TAGTAAGTATTGTCTCTAGTTTTAGAGATATAGGTGTTGCTTCAACTGACTGTTTTATAGGAGAAGTCGGATTAACTGGT
GAGGTAAGAAGAGTTTCGAGGATTGAACAAAGAGTGCAAGAGGCTGCAAAGCTCGGCTTTAAACGAGCAATCATCCCAGC
ATCGAATATGGGAGGCTGGGACTATCCAAAGGGACTTCAGGTCATTGGTGTAGAATCAGTAAATGAAGTGATGAAGGAAG
CTTTTTCTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

AAA domain (AAA_25)

(75-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.961

100

0.713
  radA Streptococcus pneumoniae Rx1

61.926

100

0.621
  radA Streptococcus pneumoniae D39

61.926

100

0.621
  radA Streptococcus pneumoniae R6

61.926

100

0.621
  radA Streptococcus pneumoniae TIGR4

61.926

100

0.621
  radA Streptococcus mitis NCTC 12261

61.926

100

0.621
  radA Streptococcus mitis SK321

61.707

100

0.618

Multiple sequence alignment