Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   MKY09_RS00815 Genome accession   NZ_CP152020
Coordinates   155004..155960 (+) Length   318 a.a.
NCBI ID   WP_169359283.1    Uniprot ID   -
Organism   Psychrobacillus sp. FSL K6-4046     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 150004..160960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY09_RS00805 (MKY09_00805) helD 150583..152769 (+) 2187 WP_342567344.1 RNA polymerase recycling motor HelD -
  MKY09_RS00810 (MKY09_00810) - 152916..154151 (+) 1236 WP_342567345.1 MFS transporter -
  MKY09_RS00815 (MKY09_00815) ceuB 155004..155960 (+) 957 WP_169359283.1 ABC transporter permease Machinery gene
  MKY09_RS00820 (MKY09_00820) - 155947..156903 (+) 957 WP_169359282.1 iron chelate uptake ABC transporter family permease subunit -
  MKY09_RS00825 (MKY09_00825) - 156900..157664 (+) 765 WP_169359281.1 ATP-binding cassette domain-containing protein -
  MKY09_RS00830 (MKY09_00830) - 157884..158924 (+) 1041 WP_169359280.1 siderophore ABC transporter substrate-binding protein -

Sequence


Protein


Download         Length: 318 a.a.        Molecular weight: 34790.92 Da        Isoelectric Point: 9.7049

>NTDB_id=985224 MKY09_RS00815 WP_169359283.1 155004..155960(+) (ceuB) [Psychrobacillus sp. FSL K6-4046]
MRLWILVVATIILSFISLFIGAIDIKPSDLLDLDSQKTQIFVMSRLPRLMAIILAGAGMGIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGVIVSMIFFTNMSYMGQIFFSFSFALIGTFIFMQLLERIKFKDVMFVPLIGIMYGNIIGAISTFLGYEADVL
QNVDSFFLGSFTLIVSGRYELLYVAVPAIIIAYIYANKFTVAGMGEDFAKNLGLSYRTVLNIGLVIVAIISTTVVLTVGI
IPFLGLIVPNLVSLYLGDNLRKTIPHTIFMGAAFLLACDIISRLIVHPYEIPVNTTVAVIGSAIFLIMLFRGKAYAKK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=985224 MKY09_RS00815 WP_169359283.1 155004..155960(+) (ceuB) [Psychrobacillus sp. FSL K6-4046]
ATGAGATTATGGATATTAGTAGTAGCAACTATTATCCTATCCTTTATTTCGCTATTTATAGGTGCCATTGATATAAAACC
GAGTGATCTGCTTGATTTGGACTCCCAGAAGACCCAAATCTTTGTAATGAGTCGATTGCCACGTTTAATGGCAATTATTT
TAGCTGGTGCAGGAATGGGTATTGCAGGCTTAATTATGCAAAGTTTAAGTCGGAATAAGTTCGTATCACCGACAACGGCC
GGTACGCTGGATGCAGCAAAACTAGGTGTCATAGTTTCGATGATATTCTTTACAAATATGTCTTATATGGGACAAATTTT
CTTTAGTTTTTCATTTGCACTAATCGGTACGTTTATTTTTATGCAATTGCTTGAGCGTATTAAGTTCAAGGATGTTATGT
TCGTACCCTTAATTGGTATTATGTATGGTAATATCATTGGTGCCATTTCCACATTCTTAGGATACGAAGCAGATGTCTTA
CAAAATGTAGATTCCTTCTTCTTAGGAAGCTTTACACTAATTGTCTCTGGACGCTATGAATTACTATACGTAGCCGTACC
TGCCATTATTATAGCTTATATTTATGCAAACAAATTCACTGTAGCAGGTATGGGTGAGGACTTTGCAAAAAACTTAGGTT
TAAGTTATCGTACAGTATTAAATATAGGTCTTGTTATTGTAGCAATTATTTCTACAACGGTCGTTTTAACAGTAGGTATT
ATACCGTTTTTAGGTTTAATCGTACCGAACCTTGTTTCTTTGTATTTAGGAGATAATTTACGCAAGACAATACCGCATAC
TATTTTCATGGGAGCAGCATTCTTACTCGCATGTGATATTATCAGCCGACTAATAGTTCATCCCTATGAGATTCCGGTAA
ATACAACAGTTGCCGTAATCGGCAGTGCGATCTTCTTAATTATGTTGTTTAGGGGGAAAGCATATGCGAAAAAATAG

Domains


Predicted by InterproScan.

(10-311)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.215

99.371

0.519


Multiple sequence alignment