Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   R8611_RS08655 Genome accession   NZ_AP026927
Coordinates   1716263..1717189 (-) Length   308 a.a.
NCBI ID   WP_044812043.1    Uniprot ID   A0AAP5J837
Organism   Streptococcus pneumoniae strain PZ900700178     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1711263..1722189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8611_RS08635 (PC0174_17130) treR 1711984..1712694 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  R8611_RS08640 - 1712849..1714175 (+) 1327 Protein_1717 transposase -
  R8611_RS08645 (PC0174_17160) amiF 1714250..1715176 (-) 927 WP_001291294.1 ATP-binding cassette domain-containing protein Regulator
  R8611_RS08650 (PC0174_17170) amiE 1715187..1716254 (-) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  R8611_RS08655 (PC0174_17180) amiD 1716263..1717189 (-) 927 WP_044812043.1 oligopeptide ABC transporter permease OppC Regulator
  R8611_RS08660 (PC0174_17190) amiC 1717189..1718685 (-) 1497 WP_317647916.1 ABC transporter permease Regulator
  R8611_RS08665 (PC0174_17200) amiA3 1718752..1720731 (-) 1980 WP_000742233.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34664.79 Da        Isoelectric Point: 9.7939

>NTDB_id=98522 R8611_RS08655 WP_044812043.1 1716263..1717189(-) (amiD) [Streptococcus pneumoniae strain PZ900700178]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWKSVFKQFMKKKSTVVMLGILVTIILISFIYPMFSKFDFNDVSKVNDFSVR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPPLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=98522 R8611_RS08655 WP_044812043.1 1716263..1717189(-) (amiD) [Streptococcus pneumoniae strain PZ900700178]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAACTATTGATGCGCCAGCATA
TTCTTACTGGAAATCAGTGTTTAAACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAACCATCA
TTTTGATAAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTGTTCGT
TATATCAAGCCAAATGCGGAGCATTGGTTCGGTACTGACAGTAACGGTAAATCGCTCTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCCATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGTA
TTTCAAAATCAGTTGACCGTGTCATGATGGAAGTTTACAACGTCATCTCAAACATCCCACCTCTTTTGATTGTTATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCCATGAGCGTAACAACATGGATTGGTATTGCCTTCAT
GATCCGTGTGCAAATCTTGCGCTATCGTGACTTGGAATACAACTTGGCGTCACGTACTTTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCTTTCTTCGGTCTTGGATTACCGATTACAGTGCCAAGTTTGGGTCGTTTGATTTCGGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACCCTTGTCTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

82.792

100

0.828
  amiD Streptococcus thermophilus LMG 18311

81.494

100

0.815
  amiD Streptococcus thermophilus LMD-9

81.494

100

0.815

Multiple sequence alignment