Detailed information NTG0985214

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACN9LS_RS07910
• Genome accession: NZ_CP184111
• Coordinates: 1584314..1585306 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AZ 190
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1579314..1590306

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACN9LS_RS07890 (ACN9LS_07890)	ygbM	1579952..1580728 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
ACN9LS_RS07895 (ACN9LS_07895)	ygbN	1580817..1582181 (+)	1365	WP_000104433.1	GntP family transporter	-
ACN9LS_RS07900 (ACN9LS_07900)	-	1582324..1583367 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
ACN9LS_RS07905 (ACN9LS_07905)	-	1583592..1584143 (+)	552	WP_001179444.1	flavodoxin family protein	-
ACN9LS_RS07910 (ACN9LS_07910)	rpoS	1584314..1585306 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACN9LS_RS07915 (ACN9LS_07915)	nlpD	1585369..1586463 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
ACN9LS_RS07920 (ACN9LS_07920)	pcm	1586648..1587274 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACN9LS_RS07925 (ACN9LS_07925)	surE	1587268..1588029 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACN9LS_RS07930 (ACN9LS_07930)	truD	1588010..1589059 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
ACN9LS_RS07935 (ACN9LS_07935)	ispF	1589056..1589535 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACN9LS_RS07940 (ACN9LS_07940)	ispD	1589535..1590245 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=985214 ACN9LS_RS07910 WP_000081550.1 1584314..1585306(-) (rpoS) [Escherichia coli strain AZ 190]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=985214 ACN9LS_RS07910 WP_000081550.1 1584314..1585306(-) (rpoS) [Escherichia coli strain AZ 190]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715