Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MKY34_RS05440 Genome accession   NZ_CP152019
Coordinates   1113862..1114812 (+) Length   316 a.a.
NCBI ID   WP_342514202.1    Uniprot ID   -
Organism   Sporosarcina sp. FSL K6-1522     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1108862..1119812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY34_RS05425 (MKY34_05425) hflX 1108879..1110150 (+) 1272 WP_342514199.1 GTPase HflX -
  MKY34_RS05430 (MKY34_05430) - 1110421..1112139 (-) 1719 WP_342514200.1 ABC transporter ATP-binding protein -
  MKY34_RS05435 (MKY34_05435) - 1112376..1113242 (+) 867 WP_342514201.1 DUF6612 family protein -
  MKY34_RS05440 (MKY34_05440) ceuB 1113862..1114812 (+) 951 WP_342514202.1 ABC transporter permease Machinery gene
  MKY34_RS05445 (MKY34_05445) - 1114805..1115755 (+) 951 WP_342514203.1 iron chelate uptake ABC transporter family permease subunit -
  MKY34_RS05450 (MKY34_05450) - 1115752..1116513 (+) 762 WP_342514204.1 ATP-binding cassette domain-containing protein -
  MKY34_RS05455 (MKY34_05455) - 1116538..1117509 (+) 972 WP_342514205.1 siderophore ABC transporter substrate-binding protein -
  MKY34_RS05460 (MKY34_05460) - 1117779..1118921 (+) 1143 WP_342515198.1 MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34929.31 Da        Isoelectric Point: 10.2187

>NTDB_id=985196 MKY34_RS05440 WP_342514202.1 1113862..1114812(+) (ceuB) [Sporosarcina sp. FSL K6-1522]
MKKRYLIVAVIILSFLSLFVGVSRITPMDLLDFRSEETEIFLISRLPRLVAILLAGAGMSIAGLIMQQLSRNKFVSPTTA
GTLDATKLGILVSMLLFANASTIEKMIVAFAFALAGTLLFMQILDRIKFKDAIFIPLVGLMFGNILSSITTFFAYKANVI
QNMSAWLQGDFSMIMKGRYELLYISIPVLIITYLYANRFTVAGMGEDFSKNLGLAYRRIVNIGLILVALITTTVVLTVGM
IPFLGLIIPNIVSIFKGDHLQKTLPHTALLGAIFVLICDILGRVLIYPYEISISLMVGVIGSGIFLYLLFRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=985196 MKY34_RS05440 WP_342514202.1 1113862..1114812(+) (ceuB) [Sporosarcina sp. FSL K6-1522]
ATGAAGAAACGTTATTTGATAGTCGCAGTTATCATTCTTTCATTCCTATCGTTATTCGTAGGAGTGAGCCGTATCACGCC
GATGGATCTACTCGATTTTAGATCTGAAGAAACGGAAATATTCTTAATTAGCCGTTTGCCAAGACTGGTCGCTATTCTAC
TTGCAGGAGCAGGGATGAGTATTGCAGGTCTTATTATGCAACAGCTGAGCCGGAACAAATTCGTTTCGCCAACAACAGCT
GGGACGCTGGATGCAACTAAACTAGGGATTCTTGTCTCTATGCTATTGTTTGCGAATGCTTCCACAATAGAAAAAATGAT
CGTCGCATTTGCATTCGCGCTTGCCGGCACGCTACTGTTTATGCAAATTCTTGATCGTATTAAATTCAAGGATGCGATTT
TCATACCGCTCGTTGGGCTGATGTTCGGTAATATTTTGTCGTCGATTACGACATTCTTCGCTTACAAAGCGAATGTGATT
CAAAATATGTCGGCATGGTTACAAGGTGATTTTTCGATGATTATGAAAGGACGTTATGAACTTCTATACATAAGTATTCC
GGTACTCATCATCACATATTTATACGCCAATCGCTTTACGGTAGCGGGGATGGGTGAGGATTTTTCAAAAAACCTCGGAC
TTGCTTATAGAAGGATCGTCAATATCGGACTTATACTTGTTGCACTTATTACGACGACTGTCGTTTTGACGGTAGGAATG
ATTCCGTTCCTCGGACTCATCATTCCAAATATCGTTTCAATATTTAAAGGGGATCACTTACAGAAGACATTGCCGCATAC
GGCGTTACTCGGTGCGATATTCGTGCTAATCTGTGATATTTTGGGCCGGGTACTCATTTATCCGTATGAGATTTCGATTA
GTTTAATGGTCGGCGTTATCGGCAGCGGAATCTTCCTCTATTTATTGTTTAGGAGGAAGGCTTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.355

99.051

0.528

Multiple sequence alignment