Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MKX97_RS16060 Genome accession   NZ_CP152016
Coordinates   3233995..3234945 (-) Length   316 a.a.
NCBI ID   WP_078818286.1    Uniprot ID   A0A1T4YNF9
Organism   Sporosarcina sp. FSL K6-3508     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3228995..3239945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX97_RS16035 (MKX97_16035) - 3229113..3229775 (-) 663 WP_342536477.1 uracil-DNA glycosylase -
  MKX97_RS16040 (MKX97_16040) - 3229885..3231027 (-) 1143 WP_081464546.1 MFS transporter -
  MKX97_RS16045 (MKX97_16045) - 3231313..3232272 (-) 960 WP_078818285.1 siderophore ABC transporter substrate-binding protein -
  MKX97_RS16050 (MKX97_16050) - 3232294..3233055 (-) 762 WP_009498920.1 ATP-binding cassette domain-containing protein -
  MKX97_RS16055 (MKX97_16055) - 3233052..3234002 (-) 951 WP_342536478.1 iron chelate uptake ABC transporter family permease subunit -
  MKX97_RS16060 (MKX97_16060) ceuB 3233995..3234945 (-) 951 WP_078818286.1 ABC transporter permease Machinery gene
  MKX97_RS16065 (MKX97_16065) - 3235182..3236051 (-) 870 WP_078818287.1 DUF6612 family protein -
  MKX97_RS16070 (MKX97_16070) hflX 3236518..3237786 (-) 1269 WP_340760633.1 GTPase HflX -
  MKX97_RS16075 (MKX97_16075) - 3237839..3238516 (-) 678 WP_342536480.1 VOC family protein -
  MKX97_RS16080 (MKX97_16080) - 3238695..3239165 (+) 471 WP_342536481.1 nucleoside deaminase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34834.17 Da        Isoelectric Point: 10.2325

>NTDB_id=985093 MKX97_RS16060 WP_078818286.1 3233995..3234945(-) (ceuB) [Sporosarcina sp. FSL K6-3508]
MKKRYLITAVILLSFLSLFVGAIRISPADLLDLRSEETEIFLISRVPRLVAILLAGAGMSIAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLMFTNATLFEKMAVSFAFALLGTFLFMQILDRIKFKDAIFIPLVGLMFGNILSSITTFFAFKANVI
QNMSAWLQGDFSMIMKGRYELLYISIPVLIITYLYANRFTVAGMGEDFSKNLGLAYKRIVNIGLILVALITTTVVLTVGM
IPFLGLIIPNIVSIFKGDHLQKTLPHTALLGAIFLLVCDILGRVIIFPYEISISLMVGVIGSGIFLYLLFRGKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=985093 MKX97_RS16060 WP_078818286.1 3233995..3234945(-) (ceuB) [Sporosarcina sp. FSL K6-3508]
ATGAAGAAACGTTATTTAATTACAGCCGTAATTCTATTGTCATTTCTTTCGCTGTTCGTGGGAGCCATTCGAATTTCACC
AGCGGATTTATTGGATTTACGCTCAGAAGAAACAGAAATTTTTTTAATTAGTCGAGTGCCACGGTTAGTAGCTATTTTGC
TGGCTGGAGCGGGGATGAGTATTGCCGGGCTGATTATGCAGCAGTTAAGCCGTAATAAGTTCGTCTCACCTACGACAGCA
GGAACACTGGATGCGACACGACTTGGAATACTAGTGTCCATGCTGATGTTTACAAATGCAACATTATTTGAAAAGATGGC
AGTTTCCTTTGCCTTCGCGCTACTAGGTACATTTTTATTTATGCAAATATTGGACCGTATTAAATTTAAAGATGCCATTT
TCATTCCGCTTGTCGGTTTGATGTTTGGGAACATCCTCTCTTCTATCACTACATTCTTTGCATTCAAGGCAAACGTAATC
CAGAATATGTCGGCTTGGTTGCAAGGTGACTTTTCAATGATCATGAAGGGACGCTATGAGCTTTTGTATATTAGCATACC
TGTCTTAATCATTACATATTTATATGCGAATCGTTTTACGGTGGCTGGAATGGGTGAGGATTTTTCTAAAAACTTAGGGT
TGGCGTATAAACGAATCGTCAATATCGGCTTGATTTTAGTTGCACTTATTACGACAACAGTTGTGTTGACGGTCGGTATG
ATACCGTTTCTCGGATTGATCATCCCGAATATCGTATCGATTTTCAAAGGTGACCATCTGCAGAAAACTTTACCGCATAC
TGCATTGCTTGGGGCAATCTTTCTTCTCGTTTGCGACATTTTAGGAAGAGTCATCATTTTCCCATACGAGATTTCGATCA
GCTTAATGGTCGGTGTCATCGGAAGCGGAATTTTCCTCTACCTGTTGTTTAGGGGGAAAGCGTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T4YNF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.355

99.051

0.528

Multiple sequence alignment