Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   MKY83_RS05140 Genome accession   NZ_CP152015
Coordinates   1063289..1063867 (+) Length   192 a.a.
NCBI ID   WP_003212419.1    Uniprot ID   -
Organism   Bacillus sp. FSL M8-0266     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1058289..1068867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY83_RS05120 (MKY83_05120) - 1058780..1060075 (-) 1296 WP_065098915.1 globin-coupled sensor protein -
  MKY83_RS05125 (MKY83_05125) - 1060167..1061699 (-) 1533 WP_268452869.1 FAD-dependent oxidoreductase -
  MKY83_RS05130 (MKY83_05130) - 1061845..1062705 (+) 861 WP_113768384.1 SDR family oxidoreductase -
  MKY83_RS05135 (MKY83_05135) - 1062769..1062999 (-) 231 WP_003210924.1 IDEAL domain-containing protein -
  MKY83_RS05140 (MKY83_05140) comK 1063289..1063867 (+) 579 WP_003212419.1 competence protein ComK Regulator
  MKY83_RS05145 (MKY83_05145) - 1064017..1065123 (+) 1107 WP_106067178.1 D-TA family PLP-dependent enzyme -
  MKY83_RS05150 (MKY83_05150) - 1065439..1065921 (+) 483 WP_106067179.1 hypothetical protein -
  MKY83_RS05155 (MKY83_05155) - 1065957..1066649 (-) 693 WP_223252844.1 PLP-dependent aminotransferase family protein -
  MKY83_RS05160 (MKY83_05160) - 1066688..1067305 (-) 618 WP_223252845.1 GntR family transcriptional regulator -
  MKY83_RS05165 (MKY83_05165) - 1067450..1068619 (+) 1170 WP_065098910.1 MFS transporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22376.45 Da        Isoelectric Point: 8.7996

>NTDB_id=985010 MKY83_RS05140 WP_003212419.1 1063289..1063867(+) (comK) [Bacillus sp. FSL M8-0266]
MSGISETPLDSYVINQTTMAILPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVIFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=985010 MKY83_RS05140 WP_003212419.1 1063289..1063867(+) (comK) [Bacillus sp. FSL M8-0266]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGATCCTTCCGGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCCCTGCAAATTATTGAACGCA
GCTGCCGATTCTTCGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGAATTTCTCACAAGCCTCCC
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGTCCTCAGTGCGGTTGGATCTCCCA
CAAATACATTCATACCTTCCAGGAATCATCCCTCGGAGACACGGTGGTCATCTTTACAAATGAGCAAACCGTCAAACTCG
ATGTCTCATATAAGTCATTTGAGAGTCAGGTGCACAGAACAGCGTATCTCCGAACGAAATTTCAAGATCGCCTTGATGGT
GGTCTTCCTAAAAAACAAGAATTTATGCTGTATCCAAAGGAACAACAGCTCAACCTTGTATATGATTTTATATTAAGGGA
GCTTCGGAACAGATATTAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

60.938

100

0.609

Multiple sequence alignment