Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | ACAK30_RS15860 | Genome accession | NZ_AP031579 |
| Coordinates | 3333486..3334001 (+) | Length | 171 a.a. |
| NCBI ID | WP_004745974.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain JUNP406 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3328486..3339001
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACAK30_RS15840 (JUNP406_3154) | - | 3328805..3330265 (+) | 1461 | WP_002133917.1 | amino acid permease | - |
| ACAK30_RS15845 (JUNP406_3155) | - | 3330542..3331747 (+) | 1206 | WP_002157334.1 | RtcB family protein | - |
| ACAK30_RS15850 (JUNP406_3156) | - | 3331766..3331909 (+) | 144 | WP_162138624.1 | hypothetical protein | - |
| ACAK30_RS15855 (JUNP406_3157) | omp38 | 3332034..3333104 (-) | 1071 | WP_004745975.1 | outer membrane protein Omp38 | - |
| ACAK30_RS15860 (JUNP406_3158) | fimT | 3333486..3334001 (+) | 516 | WP_004745974.1 | GspH/FimT family pseudopilin | Machinery gene |
| ACAK30_RS15865 (JUNP406_3159) | - | 3334110..3335285 (+) | 1176 | WP_004745972.1 | thiolase family protein | - |
| ACAK30_RS15870 (JUNP406_3160) | - | 3335411..3335854 (+) | 444 | WP_032008148.1 | VOC family protein | - |
| ACAK30_RS15875 (JUNP406_3161) | - | 3335897..3336250 (-) | 354 | WP_000457783.1 | multidrug efflux SMR transporter | - |
| ACAK30_RS15880 (JUNP406_3162) | - | 3336333..3336818 (-) | 486 | WP_000935247.1 | DUF934 domain-containing protein | - |
| ACAK30_RS15885 (JUNP406_3163) | - | 3336811..3338454 (-) | 1644 | WP_000281761.1 | nitrite/sulfite reductase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19620.88 Da Isoelectric Point: 8.8196
>NTDB_id=98498 ACAK30_RS15860 WP_004745974.1 3333486..3334001(+) (fimT) [Acinetobacter baumannii strain JUNP406]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRLISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRLISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=98498 ACAK30_RS15860 WP_004745974.1 3333486..3334001(+) (fimT) [Acinetobacter baumannii strain JUNP406]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGCCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCTTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGTCATGTACGCTTAGAAGAGCTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGCCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCTTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGTCATGTACGCTTAGAAGAGCTTAAAAATTGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
44.578 |
97.076 |
0.433 |