Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MKX52_RS09895 Genome accession   NZ_CP152014
Coordinates   1963224..1963841 (+) Length   205 a.a.
NCBI ID   WP_251184688.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0422     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1958224..1968841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX52_RS09855 (MKX52_09855) - 1958394..1959512 (+) 1119 WP_342491886.1 NADH-dependent flavin oxidoreductase -
  MKX52_RS09860 (MKX52_09860) - 1959561..1960067 (-) 507 WP_012010341.1 PTS glucose transporter subunit IIA -
  MKX52_RS09865 (MKX52_09865) - 1960236..1960655 (+) 420 WP_012010342.1 Hsp20/alpha crystallin family protein -
  MKX52_RS09870 (MKX52_09870) - 1960676..1961128 (-) 453 WP_088001033.1 YppG family protein -
  MKX52_RS09875 (MKX52_09875) - 1961235..1961606 (-) 372 WP_216887937.1 YppE family protein -
  MKX52_RS09880 (MKX52_09880) - 1961664..1961897 (-) 234 WP_342490631.1 DUF5446 family protein -
  MKX52_RS09885 (MKX52_09885) sspM 1962094..1962198 (+) 105 WP_012010346.1 acid-soluble spore protein SspM -
  MKX52_RS09890 (MKX52_09890) - 1962221..1963177 (-) 957 WP_342490632.1 DUF2515 domain-containing protein -
  MKX52_RS09895 (MKX52_09895) recU 1963224..1963841 (+) 618 WP_251184688.1 Holliday junction resolvase RecU Machinery gene
  MKX52_RS09900 (MKX52_09900) - 1963879..1966593 (+) 2715 WP_342490633.1 PBP1A family penicillin-binding protein -
  MKX52_RS09905 (MKX52_09905) - 1966629..1967138 (-) 510 WP_144504629.1 YpoC family protein -
  MKX52_RS09910 (MKX52_09910) nth 1967135..1967797 (-) 663 WP_012010351.1 endonuclease III -
  MKX52_RS09915 (MKX52_09915) - 1967815..1968519 (-) 705 WP_342490634.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23618.76 Da        Isoelectric Point: 9.2154

>NTDB_id=984969 MKX52_RS09895 WP_251184688.1 1963224..1963841(+) (recU) [Bacillus sp. FSL R5-0422]
MIRYPNGKSYQPIQPIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYRGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQK
LNGRKSISKDELKEAGHLMTLGYSPRIDYIKVVETLHFSDESEYQ

Nucleotide


Download         Length: 618 bp        

>NTDB_id=984969 MKX52_RS09895 WP_251184688.1 1963224..1963841(+) (recU) [Bacillus sp. FSL R5-0422]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACCAATTGGGACAAAAAAACGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGATTTAAACGAAACCAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCCGTTCAAATTGTGAACGTGGATTATCCAAAAAGAAGCGCTGCTGTGATCAAAGAAGCCTAT
TTTAAACAATCATCCACAACAGACTATAATGGAGTGTACAGAGGGCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTTCATGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTCGTTATTATATCCGCATTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTTCTTCTGGGAACGGCAGAAA
CTAAACGGCCGGAAATCCATTAGTAAAGATGAACTAAAGGAAGCCGGTCACTTAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGTGAGTATCAATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.277

98.537

0.712

Multiple sequence alignment