Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MKX52_RS06790 Genome accession   NZ_CP152014
Coordinates   1349562..1349840 (+) Length   92 a.a.
NCBI ID   WP_012009813.1    Uniprot ID   A8FCR0
Organism   Bacillus sp. FSL R5-0422     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1344562..1354840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX52_RS06770 (MKX52_06770) - 1344878..1346497 (+) 1620 WP_050945126.1 ATP-binding cassette domain-containing protein -
  MKX52_RS06775 (MKX52_06775) - 1346734..1347966 (-) 1233 WP_012009811.1 aminopeptidase -
  MKX52_RS06780 (MKX52_06780) - 1348073..1348204 (-) 132 WP_003210922.1 protein YkpC -
  MKX52_RS06785 (MKX52_06785) mreBH 1348279..1349286 (-) 1008 WP_144523207.1 rod-share determining protein MreBH -
  MKX52_RS06790 (MKX52_06790) abrB 1349562..1349840 (+) 279 WP_012009813.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MKX52_RS06795 (MKX52_06795) - 1349983..1351293 (+) 1311 WP_119124793.1 ATP-binding protein -
  MKX52_RS06800 (MKX52_06800) - 1351298..1352134 (+) 837 WP_342491709.1 gamma-glutamylcyclotransferase -
  MKX52_RS06805 (MKX52_06805) - 1352172..1352840 (+) 669 WP_012009816.1 TrkA family potassium uptake protein -
  MKX52_RS06810 (MKX52_06810) ade 1353103..1354833 (+) 1731 WP_144455921.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10291.94 Da        Isoelectric Point: 4.5216

>NTDB_id=984963 MKX52_RS06790 WP_012009813.1 1349562..1349840(+) (abrB) [Bacillus sp. FSL R5-0422]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHDYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=984963 MKX52_RS06790 WP_012009813.1 1349562..1349840(+) (abrB) [Bacillus sp. FSL R5-0422]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAACTGAGAAGAGCACTTGA
TATTGCTATTAAAGACAGTATGGAATTTTTTATAGATGGGGATAAAATTGTCTTGAAAAAATACCAGCCAGAAGGTGTTT
GCCTCATGACTGGTGAGATTACATCAGAGAACCATGATTATGGTAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTGTTAAAAGAACTTCAAGAAGCTCTTCAGCAGTAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8FCR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543

Multiple sequence alignment