Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MKX52_RS01900 Genome accession   NZ_CP152014
Coordinates   356499..356927 (-) Length   142 a.a.
NCBI ID   WP_088000555.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0422     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 351499..361927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX52_RS01870 (MKX52_01870) - 351652..351984 (+) 333 WP_225970048.1 YckD family protein -
  MKX52_RS01875 (MKX52_01875) - 352032..352796 (-) 765 WP_342491355.1 MBL fold metallo-hydrolase -
  MKX52_RS01880 (MKX52_01880) - 352913..353329 (+) 417 WP_186299672.1 Lrp/AsnC family transcriptional regulator -
  MKX52_RS01885 (MKX52_01885) - 353359..354165 (+) 807 WP_144470132.1 AAC(3) family N-acetyltransferase -
  MKX52_RS01890 (MKX52_01890) - 354167..354553 (-) 387 WP_342491356.1 competence protein ComJ -
  MKX52_RS01895 (MKX52_01895) - 354674..356371 (-) 1698 WP_342491357.1 methyl-accepting chemotaxis protein -
  MKX52_RS01900 (MKX52_01900) nucA/comI 356499..356927 (-) 429 WP_088000555.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  MKX52_RS01905 (MKX52_01905) - 357295..359364 (+) 2070 WP_342491358.1 hydantoinase/oxoprolinase family protein -
  MKX52_RS01910 (MKX52_01910) - 359354..361339 (+) 1986 WP_342491359.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15901.76 Da        Isoelectric Point: 4.9926

>NTDB_id=984943 MKX52_RS01900 WP_088000555.1 356499..356927(-) (nucA/comI) [Bacillus sp. FSL R5-0422]
MKLLKIILLLLLIVVGVATGYIQLEQSKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSVCTIDREHSDEQREQS
LHGIPTKRGYDRDEWPMAMCKEGGTGASVKYISPSDNRGAGSWVGHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=984943 MKX52_RS01900 WP_088000555.1 356499..356927(-) (nucA/comI) [Bacillus sp. FSL R5-0422]
ATGAAACTTCTTAAAATCATTCTCTTGCTTTTACTGATCGTCGTTGGTGTAGCAACAGGCTATATTCAGCTGGAGCAAAG
TAAACAAGAGACGACGAACTCATCTTATGACAAGACGATTCACTTCCCATCAGATCGTTACCCCGAGACCGCGAAGCACA
TAGAGGAGGCAATTGATGAAGGCCATTCATCCGTATGTACGATTGACCGTGAACATAGCGATGAACAAAGAGAACAATCA
CTTCATGGCATCCCAACAAAGCGCGGGTATGATCGAGATGAATGGCCGATGGCGATGTGCAAGGAAGGAGGAACAGGAGC
TTCAGTCAAGTATATTAGTCCTTCAGATAATAGAGGAGCAGGCTCATGGGTCGGTCATCAATTATCTGATGATCCCGACG
GCACAAGAATACAATTTATCATCGATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.942

85.211

0.57

Multiple sequence alignment