Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   NYE28_RS12930 Genome accession   NZ_CP152013
Coordinates   2624003..2624803 (-) Length   266 a.a.
NCBI ID   WP_003153177.1    Uniprot ID   I2C7K5
Organism   Bacillus sp. FSL R5-0443     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2619003..2629803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE28_RS12900 (NYE28_12900) - 2619540..2620172 (+) 633 WP_007408365.1 helix-turn-helix domain-containing protein -
  NYE28_RS12905 (NYE28_12905) - 2620469..2620606 (+) 138 WP_014470646.1 hypothetical protein -
  NYE28_RS12910 (NYE28_12910) - 2620700..2621818 (+) 1119 WP_033574248.1 NADH-dependent flavin oxidoreductase -
  NYE28_RS12915 (NYE28_12915) - 2621946..2622158 (+) 213 WP_007408362.1 spore germination protein -
  NYE28_RS12920 (NYE28_12920) - 2622284..2622496 (+) 213 WP_342490093.1 spore germination protein -
  NYE28_RS12925 (NYE28_12925) alr 2622673..2623854 (+) 1182 WP_094031829.1 alanine racemase -
  NYE28_RS12930 (NYE28_12930) spo0A 2624003..2624803 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  NYE28_RS12935 (NYE28_12935) spoIVB 2625084..2626364 (-) 1281 WP_043020798.1 SpoIVB peptidase -
  NYE28_RS12940 (NYE28_12940) recN 2626528..2628258 (-) 1731 WP_007408359.1 DNA repair protein RecN Machinery gene
  NYE28_RS12945 (NYE28_12945) argR 2628290..2628739 (-) 450 WP_003153173.1 transcriptional regulator ArgR -
  NYE28_RS12950 (NYE28_12950) - 2628836..2629681 (-) 846 WP_007612503.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=984901 NYE28_RS12930 WP_003153177.1 2624003..2624803(-) (spo0A) [Bacillus sp. FSL R5-0443]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=984901 NYE28_RS12930 WP_003153177.1 2624003..2624803(-) (spo0A) [Bacillus sp. FSL R5-0443]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCAGATGTGCTCG
TTTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCTGCGCAAAGCAGCATTATCCGCAGCCAGCCTGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACTGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTCAGC
ATGACAAAAGCAAAACCAACCAACTCGGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97

Multiple sequence alignment