Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NYE28_RS11860 Genome accession   NZ_CP152013
Coordinates   2376939..2377547 (+) Length   202 a.a.
NCBI ID   WP_094031925.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0443     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2371939..2382547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE28_RS11820 (NYE28_11820) - 2372959..2373465 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  NYE28_RS11825 (NYE28_11825) - 2373604..2374017 (+) 414 WP_017418017.1 hypothetical protein -
  NYE28_RS11830 (NYE28_11830) - 2374047..2374514 (-) 468 WP_113629808.1 YppG family protein -
  NYE28_RS11835 (NYE28_11835) - 2374701..2374883 (+) 183 WP_003153532.1 YppF family protein -
  NYE28_RS11840 (NYE28_11840) - 2374922..2375290 (-) 369 WP_007409492.1 YppE family protein -
  NYE28_RS11845 (NYE28_11845) - 2375336..2375581 (-) 246 WP_015240083.1 DUF5446 family protein -
  NYE28_RS11850 (NYE28_11850) sspM 2375787..2375891 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  NYE28_RS11855 (NYE28_11855) - 2375935..2376897 (-) 963 WP_014418234.1 DUF2515 domain-containing protein -
  NYE28_RS11860 (NYE28_11860) recU 2376939..2377547 (+) 609 WP_094031925.1 Holliday junction resolvase RecU Machinery gene
  NYE28_RS11865 (NYE28_11865) - 2377586..2380369 (+) 2784 WP_025284919.1 PBP1A family penicillin-binding protein -
  NYE28_RS11870 (NYE28_11870) - 2380447..2380938 (-) 492 WP_032870046.1 YpoC family protein -
  NYE28_RS11875 (NYE28_11875) nth 2380935..2381594 (-) 660 WP_076425357.1 endonuclease III -
  NYE28_RS11880 (NYE28_11880) dnaD 2381613..2382311 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23694.77 Da        Isoelectric Point: 9.5849

>NTDB_id=984900 NYE28_RS11860 WP_094031925.1 2376939..2377547(+) (recU) [Bacillus sp. FSL R5-0443]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRRDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=984900 NYE28_RS11860 WP_094031925.1 2376939..2377547(+) (recU) [Bacillus sp. FSL R5-0443]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGACAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAGAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

89.95

98.515

0.886

Multiple sequence alignment