Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   NYE28_RS07650 Genome accession   NZ_CP152013
Coordinates   1500502..1501638 (-) Length   378 a.a.
NCBI ID   WP_342490356.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0443     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1491383..1533424 1500502..1501638 within 0


Gene organization within MGE regions


Location: 1491383..1533424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE28_RS07565 (NYE28_07565) - 1491383..1491688 (+) 306 WP_342490349.1 hypothetical protein -
  NYE28_RS07570 (NYE28_07570) - 1492858..1492920 (-) 63 Protein_1433 putative holin-like toxin -
  NYE28_RS07575 (NYE28_07575) - 1493138..1493371 (-) 234 WP_106503129.1 hypothetical protein -
  NYE28_RS07580 (NYE28_07580) - 1493570..1493914 (-) 345 WP_215532438.1 hypothetical protein -
  NYE28_RS07585 (NYE28_07585) - 1493938..1494093 (-) 156 WP_165913834.1 hypothetical protein -
  NYE28_RS07590 (NYE28_07590) - 1494083..1494448 (-) 366 WP_258398795.1 hypothetical protein -
  NYE28_RS07595 (NYE28_07595) - 1494569..1494880 (-) 312 WP_113766294.1 hypothetical protein -
  NYE28_RS07600 (NYE28_07600) - 1495017..1495256 (+) 240 WP_095353220.1 helix-turn-helix transcriptional regulator -
  NYE28_RS07605 (NYE28_07605) - 1495382..1495663 (+) 282 WP_014417668.1 hypothetical protein -
  NYE28_RS07610 (NYE28_07610) - 1495712..1495954 (+) 243 WP_113766293.1 hypothetical protein -
  NYE28_RS07615 (NYE28_07615) - 1495993..1496511 (-) 519 WP_342490350.1 hypothetical protein -
  NYE28_RS07620 (NYE28_07620) - 1496633..1496878 (-) 246 WP_041481754.1 helix-turn-helix domain-containing protein -
  NYE28_RS07625 (NYE28_07625) - 1497381..1498100 (+) 720 WP_342490351.1 hypothetical protein -
  NYE28_RS07630 (NYE28_07630) - 1498136..1498444 (-) 309 WP_342490352.1 hypothetical protein -
  NYE28_RS07635 (NYE28_07635) - 1498457..1499881 (-) 1425 WP_342490353.1 lipase -
  NYE28_RS07640 (NYE28_07640) - 1499931..1500296 (+) 366 WP_342490354.1 DUF1433 domain-containing protein -
  NYE28_RS07645 (NYE28_07645) - 1500339..1500512 (-) 174 WP_342490355.1 hypothetical protein -
  NYE28_RS07650 (NYE28_07650) rapC 1500502..1501638 (-) 1137 WP_342490356.1 aspartate phosphatase Regulator
  NYE28_RS07655 (NYE28_07655) - 1501820..1502650 (-) 831 WP_342490357.1 SHOCT domain-containing protein -
  NYE28_RS07660 (NYE28_07660) - 1502819..1505437 (-) 2619 WP_342490358.1 phage tail protein -
  NYE28_RS07665 (NYE28_07665) - 1505510..1512559 (-) 7050 Protein_1452 phage tail tape measure protein -
  NYE28_RS07670 (NYE28_07670) - 1513306..1514439 (-) 1134 WP_265463553.1 GIY-YIG nuclease family protein -
  NYE28_RS07675 (NYE28_07675) - 1514614..1515492 (+) 879 WP_342490359.1 tyrosine-type recombinase/integrase -
  NYE28_RS07680 (NYE28_07680) - 1515602..1517107 (+) 1506 WP_342490360.1 hypothetical protein -
  NYE28_RS07685 (NYE28_07685) - 1517202..1517369 (-) 168 WP_265463556.1 hypothetical protein -
  NYE28_RS07690 (NYE28_07690) - 1517387..1517803 (-) 417 WP_342490361.1 hypothetical protein -
  NYE28_RS07695 (NYE28_07695) - 1517803..1518288 (-) 486 WP_265463558.1 hypothetical protein -
  NYE28_RS07700 (NYE28_07700) - 1518285..1518443 (-) 159 WP_257730849.1 XkdX family protein -
  NYE28_RS07705 (NYE28_07705) - 1518444..1518713 (-) 270 WP_265463559.1 hypothetical protein -
  NYE28_RS07710 (NYE28_07710) - 1518728..1520035 (-) 1308 WP_342490362.1 hypothetical protein -
  NYE28_RS07715 (NYE28_07715) - 1520074..1520643 (-) 570 WP_342490363.1 HNH endonuclease -
  NYE28_RS07720 (NYE28_07720) - 1520654..1520848 (-) 195 WP_057079931.1 hypothetical protein -
  NYE28_RS07725 (NYE28_07725) - 1521437..1524295 (-) 2859 WP_342490364.1 hypothetical protein -
  NYE28_RS07730 (NYE28_07730) - 1524313..1526217 (-) 1905 WP_342490365.1 hypothetical protein -
  NYE28_RS07735 (NYE28_07735) - 1526597..1527628 (+) 1032 WP_342490366.1 AimR family lysis-lysogeny pheromone receptor -
  NYE28_RS07740 (NYE28_07740) - 1527657..1527788 (+) 132 WP_342490367.1 hypothetical protein -
  NYE28_RS07745 (NYE28_07745) - 1528017..1528865 (+) 849 WP_342490368.1 hypothetical protein -
  NYE28_RS07750 (NYE28_07750) - 1528887..1529405 (+) 519 WP_342490369.1 hypothetical protein -
  NYE28_RS07755 (NYE28_07755) - 1529422..1529688 (+) 267 WP_342490370.1 hypothetical protein -
  NYE28_RS07760 (NYE28_07760) - 1529792..1530325 (+) 534 WP_342490371.1 hypothetical protein -
  NYE28_RS07765 (NYE28_07765) - 1530325..1530642 (+) 318 WP_342490372.1 hypothetical protein -
  NYE28_RS07770 (NYE28_07770) - 1530706..1531302 (+) 597 WP_342490373.1 hypothetical protein -
  NYE28_RS07775 (NYE28_07775) - 1531715..1532902 (+) 1188 Protein_1474 recombinase family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44671.95 Da        Isoelectric Point: 4.8741

>NTDB_id=984894 NYE28_RS07650 WP_342490356.1 1500502..1501638(-) (rapC) [Bacillus sp. FSL R5-0443]
MKQLISSSKVGVKINEWYKYIRMFSVPDAEVLKSEVEQEINAMEENQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPEIS
DLLEKIESSQAKLKGILEYYFNFFRGMYEFEEYEYLKAISFYKQAEKKLSLVADEIERAEFHYKVAEIYYHMKQTHMSMH
HIVQAIESYRAHETYSVREIQCSFVIGLNYLDMEYPEKATPHFQKAYKKALEIDMPRLAGSALYNLGISSFSEEKFDEAI
EYFKEGVLVYEQNGYEHANRLLDILFMLAKTNFKVNKKTEGTAVYNHGLSLAKNLNDEVLTKMFDFLNALYIDDNKETLN
EILTYLEFKTMFSDVEDLATDAAKYYTKNEDHKAAGLFYEKVLYAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=984894 NYE28_RS07650 WP_342490356.1 1500502..1501638(-) (rapC) [Bacillus sp. FSL R5-0443]
TTGAAACAGTTAATCTCCTCATCAAAAGTCGGCGTGAAGATTAATGAGTGGTACAAGTATATTCGTATGTTTAGTGTTCC
TGATGCAGAGGTGCTGAAATCAGAAGTGGAACAAGAAATAAACGCTATGGAAGAAAATCAGGATTTATTGTTGTACTATT
CCCTCATGTGTTTTAGGCATCAATTAATGCTTGATTATCTGGAGCCAAAAACCATGAATGAAGAACGACCCGAGATTTCA
GACTTATTAGAAAAGATCGAAAGTAGCCAAGCTAAATTGAAAGGAATTCTTGAATATTACTTTAACTTTTTCCGTGGGAT
GTATGAATTTGAAGAATACGAATATCTTAAAGCGATAAGTTTTTACAAACAAGCGGAAAAGAAGCTGTCACTTGTAGCCG
ACGAAATTGAGCGAGCGGAGTTTCATTACAAAGTCGCTGAAATTTATTATCACATGAAACAAACACACATGTCGATGCAC
CATATTGTTCAAGCAATTGAAAGCTACAGAGCGCATGAAACCTATTCTGTTAGAGAAATTCAATGTTCATTCGTCATTGG
TCTGAATTATTTAGACATGGAGTATCCAGAAAAGGCCACCCCTCATTTTCAAAAAGCTTATAAAAAAGCACTTGAAATTG
ATATGCCAAGATTAGCTGGATCCGCTCTATATAATTTAGGGATTTCCTCTTTTTCTGAAGAAAAGTTCGATGAGGCTATT
GAGTATTTCAAAGAAGGAGTGTTGGTCTATGAGCAAAACGGATATGAACATGCTAACCGCTTATTAGACATTCTTTTCAT
GTTAGCGAAAACGAACTTTAAGGTAAATAAGAAAACTGAAGGAACAGCTGTTTATAATCATGGACTGTCATTGGCTAAAA
ACTTAAATGATGAAGTATTAACCAAAATGTTTGATTTCCTAAATGCCCTTTACATTGACGATAACAAAGAAACGCTAAAT
GAGATTCTTACTTATTTAGAATTTAAAACAATGTTTTCCGATGTGGAGGACTTAGCAACCGACGCAGCGAAGTATTATAC
AAAAAATGAAGACCATAAAGCGGCTGGATTATTTTATGAGAAAGTGCTTTATGCCCAAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(222-248)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

48.148

100

0.481
  rapF Bacillus subtilis subsp. subtilis str. 168

45.144

100

0.455

Multiple sequence alignment