Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   NYE28_RS07230 Genome accession   NZ_CP152013
Coordinates   1385786..1386382 (+) Length   198 a.a.
NCBI ID   WP_012117447.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0443     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1380786..1391382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE28_RS07200 (NYE28_07200) - 1380999..1381454 (+) 456 WP_007409622.1 flavodoxin -
  NYE28_RS07205 (NYE28_07205) dapD 1381536..1382246 (+) 711 WP_012117443.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  NYE28_RS07210 (NYE28_07210) - 1382317..1383441 (+) 1125 WP_038463797.1 N-acetyldiaminopimelate deacetylase -
  NYE28_RS07215 (NYE28_07215) - 1383502..1383747 (+) 246 WP_003154596.1 YkuS family protein -
  NYE28_RS07220 (NYE28_07220) - 1383781..1384587 (-) 807 WP_160223022.1 mechanosensitive ion channel family protein -
  NYE28_RS07225 (NYE28_07225) - 1384875..1385333 (+) 459 WP_038463805.1 TlpA disulfide reductase family protein -
  NYE28_RS07230 (NYE28_07230) rok 1385786..1386382 (+) 597 WP_012117447.1 transcriptional regulator Rok Regulator
  NYE28_RS07235 (NYE28_07235) - 1386406..1387398 (-) 993 WP_043021218.1 hypothetical protein -
  NYE28_RS07240 (NYE28_07240) - 1387544..1388146 (+) 603 WP_130571042.1 molybdenum cofactor guanylyltransferase -
  NYE28_RS07245 (NYE28_07245) - 1388198..1389217 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  NYE28_RS07250 (NYE28_07250) glp 1389235..1390527 (+) 1293 WP_192452972.1 gephyrin-like molybdotransferase Glp -
  NYE28_RS07255 (NYE28_07255) mobB 1390488..1391009 (+) 522 WP_337681102.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22495.54 Da        Isoelectric Point: 9.6909

>NTDB_id=984892 NYE28_RS07230 WP_012117447.1 1385786..1386382(+) (rok) [Bacillus sp. FSL R5-0443]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=984892 NYE28_RS07230 WP_012117447.1 1385786..1386382(+) (rok) [Bacillus sp. FSL R5-0443]
ATGTTTAATGAAAGAGAAGCGCTACGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCTGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment