Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   NYE28_RS07130 Genome accession   NZ_CP152013
Coordinates   1369920..1370384 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus sp. FSL R5-0443     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1364920..1375384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE28_RS07110 (NYE28_07110) - 1365402..1367222 (+) 1821 WP_015417363.1 PAS domain-containing protein -
  NYE28_RS07115 (NYE28_07115) - 1367247..1368416 (-) 1170 WP_181467537.1 aminotransferase A -
  NYE28_RS07120 (NYE28_07120) - 1368617..1368778 (-) 162 WP_195182964.1 hypothetical protein -
  NYE28_RS07125 (NYE28_07125) cheV 1368967..1369878 (+) 912 WP_039251615.1 chemotaxis protein CheV -
  NYE28_RS07130 (NYE28_07130) kre 1369920..1370384 (-) 465 WP_003154622.1 YkyB family protein Regulator
  NYE28_RS07135 (NYE28_07135) - 1370507..1371799 (-) 1293 WP_015239757.1 MFS transporter -
  NYE28_RS07140 (NYE28_07140) - 1371875..1372369 (-) 495 WP_088462390.1 L,D-transpeptidase family protein -
  NYE28_RS07145 (NYE28_07145) - 1372444..1373307 (-) 864 WP_337681103.1 metallophosphoesterase -
  NYE28_RS07150 (NYE28_07150) fadH 1373452..1374216 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  NYE28_RS07155 (NYE28_07155) - 1374381..1374876 (+) 496 Protein_1350 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=984891 NYE28_RS07130 WP_003154622.1 1369920..1370384(-) (kre) [Bacillus sp. FSL R5-0443]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=984891 NYE28_RS07130 WP_003154622.1 1369920..1370384(-) (kre) [Bacillus sp. FSL R5-0443]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment