Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NYE28_RS05385 Genome accession   NZ_CP152013
Coordinates   1047323..1047901 (+) Length   192 a.a.
NCBI ID   WP_144664068.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0443     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1042323..1052901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE28_RS05365 (NYE28_05365) - 1042824..1044116 (-) 1293 WP_015417166.1 globin-coupled sensor protein -
  NYE28_RS05370 (NYE28_05370) - 1044238..1045761 (-) 1524 WP_337681294.1 FAD-dependent oxidoreductase -
  NYE28_RS05375 (NYE28_05375) - 1045886..1046743 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  NYE28_RS05380 (NYE28_05380) - 1046774..1047007 (-) 234 WP_012117233.1 IDEAL domain-containing protein -
  NYE28_RS05385 (NYE28_05385) comK 1047323..1047901 (+) 579 WP_144664068.1 competence protein ComK Regulator
  NYE28_RS05390 (NYE28_05390) - 1048046..1048414 (+) 369 WP_342490330.1 iron chaperone -
  NYE28_RS05395 (NYE28_05395) - 1048441..1048812 (+) 372 WP_015239528.1 iron chaperone -
  NYE28_RS05400 (NYE28_05400) - 1048935..1049444 (+) 510 WP_337681298.1 MepB family protein -
  NYE28_RS05405 (NYE28_05405) - 1049673..1050383 (-) 711 WP_227051463.1 YrpD family protein -
  NYE28_RS05410 (NYE28_05410) - 1050579..1050848 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  NYE28_RS05415 (NYE28_05415) - 1050880..1051197 (-) 318 WP_003155166.1 YbjQ family protein -
  NYE28_RS05420 (NYE28_05420) - 1051239..1052708 (-) 1470 WP_337681303.1 sodium:solute symporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22314.59 Da        Isoelectric Point: 8.4529

>NTDB_id=984880 NYE28_RS05385 WP_144664068.1 1047323..1047901(+) (comK) [Bacillus sp. FSL R5-0443]
MCQKTHAPLESYEVNRSTIAVLPEEINGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=984880 NYE28_RS05385 WP_144664068.1 1047323..1047901(+) (comK) [Bacillus sp. FSL R5-0443]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTATGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAAA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGTATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAGCTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

81.771

100

0.818

Multiple sequence alignment