Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NYE68_RS18965 Genome accession   NZ_CP152012
Coordinates   3770850..3771539 (-) Length   229 a.a.
NCBI ID   WP_197093073.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0447     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3765850..3776539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE68_RS18930 (NYE68_18930) fliW 3765941..3766372 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  NYE68_RS18935 (NYE68_18935) - 3766402..3766971 (-) 570 WP_007407476.1 DUF6470 family protein -
  NYE68_RS18940 (NYE68_18940) flgL 3767062..3767979 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  NYE68_RS18945 (NYE68_18945) flgK 3767991..3769508 (-) 1518 WP_025285351.1 flagellar hook-associated protein FlgK -
  NYE68_RS18950 (NYE68_18950) - 3769524..3770006 (-) 483 WP_003151394.1 flagellar protein FlgN -
  NYE68_RS18955 (NYE68_18955) flgM 3770021..3770287 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NYE68_RS18960 (NYE68_18960) - 3770357..3770776 (-) 420 WP_324636352.1 TIGR03826 family flagellar region protein -
  NYE68_RS18965 (NYE68_18965) comFC 3770850..3771539 (-) 690 WP_197093073.1 phosphoribosyltransferase family protein Machinery gene
  NYE68_RS18970 (NYE68_18970) - 3771545..3771829 (-) 285 WP_003151389.1 competence protein ComFB -
  NYE68_RS18975 (NYE68_18975) comFA 3771887..3773272 (-) 1386 WP_040238815.1 DEAD/DEAH box helicase Machinery gene
  NYE68_RS18980 (NYE68_18980) - 3773380..3774228 (-) 849 WP_015418336.1 DegV family protein -
  NYE68_RS18985 (NYE68_18985) degU 3774326..3775015 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NYE68_RS18990 (NYE68_18990) degS 3775092..3776255 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25270.84 Da        Isoelectric Point: 8.0838

>NTDB_id=984851 NYE68_RS18965 WP_197093073.1 3770850..3771539(-) (comFC) [Bacillus sp. FSL R5-0447]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKHFLLRQNRSVY
LYNDAMKDSLARFKFRGDTKIIQAFERDFSAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=984851 NYE68_RS18965 WP_197093073.1 3770850..3771539(-) (comFC) [Bacillus sp. FSL R5-0447]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCGATTTGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCCAAAACGGAAAAGCACTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATACGAAAATCATTCAAGCATTTGAACG
TGACTTTTCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment