Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NYE68_RS12130 Genome accession   NZ_CP152012
Coordinates   2424563..2425171 (+) Length   202 a.a.
NCBI ID   WP_031304205.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0447     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2419563..2430171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE68_RS12090 (NYE68_12090) - 2420583..2421089 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  NYE68_RS12095 (NYE68_12095) - 2421228..2421641 (+) 414 WP_017418017.1 hypothetical protein -
  NYE68_RS12100 (NYE68_12100) - 2421671..2422138 (-) 468 WP_105937586.1 YppG family protein -
  NYE68_RS12105 (NYE68_12105) - 2422325..2422507 (+) 183 WP_003153532.1 YppF family protein -
  NYE68_RS12110 (NYE68_12110) - 2422546..2422914 (-) 369 WP_061862317.1 YppE family protein -
  NYE68_RS12115 (NYE68_12115) - 2422960..2423205 (-) 246 WP_014418233.1 DUF5446 family protein -
  NYE68_RS12120 (NYE68_12120) sspM 2423411..2423515 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  NYE68_RS12125 (NYE68_12125) - 2423559..2424521 (-) 963 WP_031304204.1 DUF2515 domain-containing protein -
  NYE68_RS12130 (NYE68_12130) recU 2424563..2425171 (+) 609 WP_031304205.1 Holliday junction resolvase RecU Machinery gene
  NYE68_RS12135 (NYE68_12135) - 2425210..2427993 (+) 2784 WP_324636761.1 PBP1A family penicillin-binding protein -
  NYE68_RS12140 (NYE68_12140) - 2428071..2428562 (-) 492 WP_061046661.1 YpoC family protein -
  NYE68_RS12145 (NYE68_12145) nth 2428559..2429218 (-) 660 WP_063094937.1 endonuclease III -
  NYE68_RS12150 (NYE68_12150) dnaD 2429237..2429935 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23652.73 Da        Isoelectric Point: 9.5778

>NTDB_id=984824 NYE68_RS12130 WP_031304205.1 2424563..2425171(+) (recU) [Bacillus sp. FSL R5-0447]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWDRKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=984824 NYE68_RS12130 WP_031304205.1 2424563..2425171(+) (recU) [Bacillus sp. FSL R5-0447]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAACATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGACAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896

Multiple sequence alignment