Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NYE68_RS08870 Genome accession   NZ_CP152012
Coordinates   1739690..1740589 (+) Length   299 a.a.
NCBI ID   WP_033574575.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0447     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1734690..1745589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE68_RS08850 (NYE68_08850) - 1735380..1737083 (+) 1704 WP_324635850.1 glycosyl transferase -
  NYE68_RS08855 (NYE68_08855) - 1737080..1737361 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  NYE68_RS08860 (NYE68_08860) sucC 1737536..1738693 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  NYE68_RS08865 (NYE68_08865) sucD 1738722..1739624 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  NYE68_RS08870 (NYE68_08870) dprA 1739690..1740589 (+) 900 WP_033574575.1 DNA-processing protein DprA Machinery gene
  NYE68_RS08875 (NYE68_08875) topA 1740771..1742846 (+) 2076 WP_007409771.1 type I DNA topoisomerase -
  NYE68_RS08880 (NYE68_08880) trmFO 1742911..1744218 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NYE68_RS08885 (NYE68_08885) xerC 1744288..1745205 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32894.16 Da        Isoelectric Point: 8.4593

>NTDB_id=984819 NYE68_RS08870 WP_033574575.1 1739690..1740589(+) (dprA) [Bacillus sp. FSL R5-0447]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEAIFREIERKDPKLDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYMEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=984819 NYE68_RS08870 WP_033574575.1 1739690..1740589(+) (dprA) [Bacillus sp. FSL R5-0447]
TTGGATCAAGCATCGCGATGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCATTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGAAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATATGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.903

100

0.709
  dprA Lactococcus lactis subsp. cremoris KW2

41.667

88.294

0.368

Multiple sequence alignment