Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   NYE68_RS07915 Genome accession   NZ_CP152012
Coordinates   1505307..1505903 (+) Length   198 a.a.
NCBI ID   WP_229041455.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0447     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1500307..1510903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE68_RS07885 (NYE68_07885) - 1500520..1500975 (+) 456 WP_033574618.1 flavodoxin -
  NYE68_RS07890 (NYE68_07890) dapD 1501057..1501767 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  NYE68_RS07895 (NYE68_07895) - 1501838..1502962 (+) 1125 WP_012117444.1 N-acetyldiaminopimelate deacetylase -
  NYE68_RS07900 (NYE68_07900) - 1503023..1503268 (+) 246 WP_003154596.1 YkuS family protein -
  NYE68_RS07905 (NYE68_07905) - 1503302..1504108 (-) 807 WP_015417373.1 mechanosensitive ion channel family protein -
  NYE68_RS07910 (NYE68_07910) - 1504397..1504855 (+) 459 WP_060675395.1 TlpA disulfide reductase family protein -
  NYE68_RS07915 (NYE68_07915) rok 1505307..1505903 (+) 597 WP_229041455.1 transcriptional regulator Rok Regulator
  NYE68_RS07920 (NYE68_07920) - 1505924..1506916 (-) 993 WP_007409627.1 hypothetical protein -
  NYE68_RS07925 (NYE68_07925) - 1507062..1507664 (+) 603 WP_225046246.1 molybdenum cofactor guanylyltransferase -
  NYE68_RS07930 (NYE68_07930) - 1507716..1508735 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  NYE68_RS07935 (NYE68_07935) glp 1508753..1510045 (+) 1293 WP_015417375.1 gephyrin-like molybdotransferase Glp -
  NYE68_RS07940 (NYE68_07940) mobB 1510006..1510527 (+) 522 WP_007409631.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22521.58 Da        Isoelectric Point: 9.6909

>NTDB_id=984817 NYE68_RS07915 WP_229041455.1 1505307..1505903(+) (rok) [Bacillus sp. FSL R5-0447]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETPETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=984817 NYE68_RS07915 WP_229041455.1 1505307..1505903(+) (rok) [Bacillus sp. FSL R5-0447]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCTGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACACCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

85.567

97.98

0.838

Multiple sequence alignment