Detailed information NTG0984791

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACN9LT_RS07335
• Genome accession: NZ_CP184086
• Coordinates: 1504601..1505593 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AZ167
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1499601..1510593

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACN9LT_RS07315 (ACN9LT_07315)	ygbM	1500239..1501015 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
ACN9LT_RS07320 (ACN9LT_07320)	ygbN	1501104..1502468 (+)	1365	WP_000104433.1	GntP family transporter	-
ACN9LT_RS07325 (ACN9LT_07325)	-	1502611..1503654 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
ACN9LT_RS07330 (ACN9LT_07330)	-	1503879..1504430 (+)	552	WP_001179444.1	flavodoxin family protein	-
ACN9LT_RS07335 (ACN9LT_07335)	rpoS	1504601..1505593 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACN9LT_RS07340 (ACN9LT_07340)	nlpD	1505656..1506750 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
ACN9LT_RS07345 (ACN9LT_07345)	pcm	1506935..1507561 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACN9LT_RS07350 (ACN9LT_07350)	surE	1507555..1508316 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACN9LT_RS07355 (ACN9LT_07355)	truD	1508297..1509346 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
ACN9LT_RS07360 (ACN9LT_07360)	ispF	1509343..1509822 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACN9LT_RS07365 (ACN9LT_07365)	ispD	1509822..1510532 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=984791 ACN9LT_RS07335 WP_000081550.1 1504601..1505593(-) (rpoS) [Escherichia coli strain AZ167]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=984791 ACN9LT_RS07335 WP_000081550.1 1504601..1505593(-) (rpoS) [Escherichia coli strain AZ167]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715