Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACAK30_RS08840 Genome accession   NZ_AP031579
Coordinates   1854787..1855422 (+) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain JUNP406     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1849787..1860422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAK30_RS08815 (JUNP406_1753) - 1850627..1851640 (+) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -
  ACAK30_RS08820 (JUNP406_1754) murU 1851640..1852329 (+) 690 WP_000646456.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  ACAK30_RS08825 (JUNP406_1755) rsmG 1852417..1853049 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  ACAK30_RS08830 (JUNP406_1756) - 1853071..1853853 (+) 783 WP_000057212.1 ParA family protein -
  ACAK30_RS08835 (JUNP406_1757) - 1853850..1854737 (+) 888 WP_004747388.1 ParB/RepB/Spo0J family partition protein -
  ACAK30_RS08840 (JUNP406_1758) exbB 1854787..1855422 (+) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACAK30_RS08845 (JUNP406_1759) - 1855438..1855866 (+) 429 WP_000669683.1 biopolymer transporter ExbD -
  ACAK30_RS08850 (JUNP406_1760) msbA 1855863..1857590 (+) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  ACAK30_RS08855 (JUNP406_1761) lpxK 1857593..1858603 (+) 1011 WP_000050454.1 tetraacyldisaccharide 4'-kinase -
  ACAK30_RS08860 (JUNP406_1762) kdsB 1858613..1859374 (+) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACAK30_RS08865 (JUNP406_1763) - 1859386..1860366 (+) 981 WP_004747384.1 DNA polymerase III, delta' subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=98476 ACAK30_RS08840 WP_000264037.1 1854787..1855422(+) (exbB) [Acinetobacter baumannii strain JUNP406]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=98476 ACAK30_RS08840 WP_000264037.1 1854787..1855422(+) (exbB) [Acinetobacter baumannii strain JUNP406]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACTTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393

Multiple sequence alignment