Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NYE36_RS01815 Genome accession   NZ_CP152011
Coordinates   371516..371953 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0593     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 366516..376953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE36_RS01790 (NYE36_01790) - 367536..368672 (+) 1137 WP_007409359.1 zinc-dependent alcohol dehydrogenase -
  NYE36_RS01795 (NYE36_01795) - 368687..369121 (+) 435 WP_007409358.1 RDD family protein -
  NYE36_RS01800 (NYE36_01800) - 369193..369516 (+) 324 WP_007409357.1 YckD family protein -
  NYE36_RS01805 (NYE36_01805) - 369620..371056 (+) 1437 WP_265451395.1 family 1 glycosylhydrolase -
  NYE36_RS01810 (NYE36_01810) nin/comJ 371097..371495 (-) 399 WP_144664492.1 competence protein ComJ Regulator
  NYE36_RS01815 (NYE36_01815) nucA/comI 371516..371953 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NYE36_RS01820 (NYE36_01820) hxlB 372311..372868 (-) 558 WP_015239129.1 6-phospho-3-hexuloisomerase -
  NYE36_RS01825 (NYE36_01825) hxlA 372865..373500 (-) 636 WP_095352416.1 3-hexulose-6-phosphate synthase -
  NYE36_RS01830 (NYE36_01830) - 373732..374094 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=984721 NYE36_RS01815 WP_003156588.1 371516..371953(-) (nucA/comI) [Bacillus sp. FSL R5-0593]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=984721 NYE36_RS01815 WP_003156588.1 371516..371953(-) (nucA/comI) [Bacillus sp. FSL R5-0593]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment