Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MKY18_RS11590 Genome accession   NZ_CP152010
Coordinates   2297612..2298382 (-) Length   256 a.a.
NCBI ID   WP_034661344.1    Uniprot ID   -
Organism   Bacillus sp. FSL R7-0672     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2292612..2303382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY18_RS11570 (MKY18_11570) - 2292705..2293526 (-) 822 WP_044139409.1 pyruvate, water dikinase regulatory protein -
  MKY18_RS11575 (MKY18_11575) - 2293552..2294190 (-) 639 WP_034620854.1 helix-turn-helix transcriptional regulator -
  MKY18_RS11580 (MKY18_11580) glyS 2294357..2296402 (-) 2046 WP_044139410.1 glycine--tRNA ligase subunit beta -
  MKY18_RS11585 (MKY18_11585) glyQ 2296395..2297282 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  MKY18_RS11590 (MKY18_11590) recO 2297612..2298382 (-) 771 WP_034661344.1 DNA repair protein RecO Machinery gene
  MKY18_RS11595 (MKY18_11595) - 2298417..2298560 (-) 144 WP_065098441.1 YqzL family protein -
  MKY18_RS11600 (MKY18_11600) era 2298709..2299614 (-) 906 WP_065098416.1 GTPase Era -
  MKY18_RS11605 (MKY18_11605) - 2299607..2300005 (-) 399 WP_003217296.1 cytidine deaminase -
  MKY18_RS11610 (MKY18_11610) - 2300119..2300505 (-) 387 WP_044139413.1 diacylglycerol kinase family protein -
  MKY18_RS11615 (MKY18_11615) ybeY 2300483..2300962 (-) 480 WP_012010615.1 rRNA maturation RNase YbeY -
  MKY18_RS11620 (MKY18_11620) - 2300963..2303050 (-) 2088 WP_342497832.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29244.92 Da        Isoelectric Point: 8.4348

>NTDB_id=984690 MKY18_RS11590 WP_034661344.1 2297612..2298382(-) (recO) [Bacillus sp. FSL R7-0672]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMGGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=984690 MKY18_RS11590 WP_034661344.1 2297612..2298382(-) (recO) [Bacillus sp. FSL R7-0672]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCAAAAAAATCAAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGAACC
ATTCGGGAGGATTTATTCTTGACCGCATATGCCGCATATATGACAGAGTTACTCGATAAAGGCACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTCCTGCTTCAATCTTTGCGTCATCTGAATGAAGGTACAGATGCTGATATTATCTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTGATGGGAATGAAGCCCGAACTGGATCAATGTGTCCACTGTGGTCAAAAAGAAGGG
CAGTTTCATTTCTCGATTAGAGACAACGGCTTTATTTGCCAAAATTGCTTTTCTAAAGATCCGTATAAACTGCCCTTATC
TCCAGCAGCTGCAAGGCTGCTCCGTTTATTTCATTATTTTGATTTATCAAGGCTCGGTCAGGTTGATGTGAAACCGCAGA
CGAAACAAGAAATTCGTCAAGTGCTCGATCACTACTATGAAGAGTATTCAGGCCTTTATTTGAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTCATGGGTGGGGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758

Multiple sequence alignment