Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   MKY18_RS11315 Genome accession   NZ_CP152010
Coordinates   2247899..2248969 (-) Length   356 a.a.
NCBI ID   WP_044140966.1    Uniprot ID   A0AB34QT08
Organism   Bacillus sp. FSL R7-0672     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2242899..2253969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY18_RS11265 (MKY18_11265) - 2242992..2243564 (-) 573 WP_044140976.1 signal peptidase I -
  MKY18_RS11270 (MKY18_11270) tapA 2243616..2244143 (-) 528 WP_044140975.1 amyloid fiber anchoring/assembly protein TapA -
  MKY18_RS11275 (MKY18_11275) - 2244443..2244721 (+) 279 WP_065098439.1 DUF3889 domain-containing protein -
  MKY18_RS11280 (MKY18_11280) - 2244755..2244949 (-) 195 WP_044140973.1 YqzE family protein -
  MKY18_RS11285 (MKY18_11285) comGG 2245009..2245392 (-) 384 WP_044140972.1 competence type IV pilus minor pilin ComGG -
  MKY18_RS11290 (MKY18_11290) comGF 2245389..2245919 (-) 531 WP_258395182.1 competence type IV pilus minor pilin ComGF -
  MKY18_RS11295 (MKY18_11295) comGE 2245828..2246145 (-) 318 WP_044140968.1 competence type IV pilus minor pilin ComGE -
  MKY18_RS11300 (MKY18_11300) comGD 2246129..2246575 (-) 447 WP_044140967.1 competence type IV pilus minor pilin ComGD -
  MKY18_RS11305 (MKY18_11305) comGC 2246568..2246861 (-) 294 WP_003217322.1 competence type IV pilus major pilin ComGC Machinery gene
  MKY18_RS11310 (MKY18_11310) comGB 2246878..2247957 (-) 1080 WP_231129518.1 competence type IV pilus assembly protein ComGB -
  MKY18_RS11315 (MKY18_11315) comGA 2247899..2248969 (-) 1071 WP_044140966.1 competence type IV pilus ATPase ComGA Machinery gene
  MKY18_RS11320 (MKY18_11320) - 2249148..2250020 (-) 873 WP_065098399.1 STAS domain-containing protein -
  MKY18_RS11330 (MKY18_11330) - 2250244..2250624 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  MKY18_RS11335 (MKY18_11335) - 2250838..2251080 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  MKY18_RS11340 (MKY18_11340) - 2251126..2251764 (-) 639 WP_065098400.1 MBL fold metallo-hydrolase -
  MKY18_RS11345 (MKY18_11345) - 2251922..2252095 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  MKY18_RS11350 (MKY18_11350) - 2252318..2252632 (-) 315 WP_034662003.1 MTH1187 family thiamine-binding protein -
  MKY18_RS11355 (MKY18_11355) - 2252711..2253964 (-) 1254 WP_065098401.1 MFS transporter -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40283.64 Da        Isoelectric Point: 9.0692

>NTDB_id=984689 MKY18_RS11315 WP_044140966.1 2247899..2248969(-) (comGA) [Bacillus sp. FSL R7-0672]
MYGIEYLGQELLEEACRMRASDVHIVPKEKEASVSFRVDSDLIQQRTIDKKSGERLIAHFKFLSSMDIGEKRRPQNGSLA
VMLRSGQVFIRMSTLPTVNDESLVIRILPQDHVPKIKHLSLFPKASTRLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKNFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDMIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELTCPFCGETCQLYCKLNRPVRRTNVFELLFGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKNTYHRWVYEEASL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=984689 MKY18_RS11315 WP_044140966.1 2247899..2248969(-) (comGA) [Bacillus sp. FSL R7-0672]
TTGTATGGGATTGAATATTTGGGACAAGAGCTGCTAGAAGAAGCATGCCGCATGAGAGCATCTGATGTGCACATTGTTCC
AAAAGAAAAGGAAGCGTCGGTATCTTTCCGCGTAGACTCAGATTTAATTCAGCAGCGAACCATTGATAAAAAAAGCGGCG
AGCGGCTCATTGCTCATTTTAAATTTTTATCATCCATGGATATTGGAGAAAAAAGGAGGCCGCAAAATGGGTCACTAGCT
GTGATGCTAAGAAGCGGCCAGGTGTTTATTCGAATGTCTACCCTACCAACTGTAAATGATGAGAGTTTAGTGATTAGAAT
ATTGCCGCAGGATCATGTTCCGAAAATAAAACATCTGTCACTATTTCCGAAAGCCTCCACCAGGTTATTATCATTTTTGA
ATCATTCGCATGGGCTCATTTTATTTACCGGTCCAACCAATTCAGGGAAAACAACAACCCTTTATTCATTGATCCAGTTT
GCAAAAAAGAATTTCAACCGAAATATTATTACACTTGAAGATCCTGTGGAAACGAGAAATGAAGAAGTGCTGCAGGTTCA
AGTAAATGAAAAAGCCGGCATCACATATGCCGCAGGATTACGCGCTATTTTAAGACATGATCCAGATATGATTGTGCTAG
GAGAAATAAGAGATGCTGAAACGGCCCGAACGGCAATTAGAGCAGCACTAACAGGCCATTTAGTGATGAGTACACTCCAT
GCGAAAAATGCAAAAGGAGCCCTTTATCGTATGCTTGAATTTGGTGTCACGATGAATGAACTCGAACAAACGATGGTGGC
GATTGCTGCGCAGCGATTAATCGAGCTCACCTGTCCATTTTGCGGAGAAACATGCCAGCTTTACTGTAAATTAAATCGAC
CGGTCAGACGAACAAATGTATTTGAACTGCTGTTCGGAAAGGAGCTCGGTGAGTGTATCAAGGAGGCTAAAGGAGAATAT
GCTCACTCGTCATATGAAACACTGCAAAGATTAATTCGTAAAGGAGTGGCACTTGGCTATTTATCGAAAAACACCTATCA
TCGCTGGGTTTATGAAGAAGCAAGCCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

64.407

99.438

0.64

Multiple sequence alignment