Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MKY18_RS01925 Genome accession   NZ_CP152010
Coordinates   357900..358328 (-) Length   142 a.a.
NCBI ID   WP_044140469.1    Uniprot ID   A0AB34QU23
Organism   Bacillus sp. FSL R7-0672     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 352900..363328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY18_RS01885 (MKY18_01885) - 353022..353894 (-) 873 WP_003214277.1 transporter substrate-binding domain-containing protein -
  MKY18_RS01890 (MKY18_01890) - 354075..354398 (+) 324 WP_044140620.1 YckD family protein -
  MKY18_RS01895 (MKY18_01895) - 354454..355218 (-) 765 WP_113768526.1 MBL fold metallo-hydrolase -
  MKY18_RS01900 (MKY18_01900) - 355334..355750 (+) 417 WP_044140465.1 Lrp/AsnC family transcriptional regulator -
  MKY18_RS01905 (MKY18_01905) - 355779..356585 (+) 807 WP_065098771.1 AAC(3) family N-acetyltransferase -
  MKY18_RS01910 (MKY18_01910) - 356587..356973 (-) 387 WP_113768527.1 competence protein ComJ -
  MKY18_RS01915 (MKY18_01915) - 357094..357582 (-) 489 WP_342497819.1 methyl-accepting chemotaxis protein -
  MKY18_RS01920 (MKY18_01920) - 357522..357773 (-) 252 WP_268484570.1 hypothetical protein -
  MKY18_RS01925 (MKY18_01925) nucA/comI 357900..358328 (-) 429 WP_044140469.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  MKY18_RS01930 (MKY18_01930) - 358696..360765 (+) 2070 WP_268484564.1 hydantoinase/oxoprolinase family protein -
  MKY18_RS01935 (MKY18_01935) - 360755..362740 (+) 1986 WP_065098775.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15927.84 Da        Isoelectric Point: 5.5491

>NTDB_id=984658 MKY18_RS01925 WP_044140469.1 357900..358328(-) (nucA/comI) [Bacillus sp. FSL R7-0672]
MKLLKIILLLLLIVVGVATGYIQLEQSKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSVCTIDRKHSDEQREQS
LHGIPTKRGYDRDEWPMAMCKEGGTGASVKYINPSDNRGAGSWVGHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=984658 MKY18_RS01925 WP_044140469.1 357900..358328(-) (nucA/comI) [Bacillus sp. FSL R7-0672]
ATGAAACTTCTTAAAATCATTCTCTTGCTTTTACTGATCGTCGTTGGTGTAGCAACAGGCTATATTCAGCTGGAGCAAAG
TAAACAAGAGACGACGAATTCATCTTATGACAAAACGATTCACTTCCCATCAGATCGTTACCCCGAAACCGCTAAGCACA
TAGAAGAGGCCATTGATGAAGGCCATTCATCCGTATGTACGATTGACCGTAAACATAGCGATGAACAAAGAGAACAATCA
CTTCATGGCATCCCAACAAAGCGCGGGTATGATCGGGACGAATGGCCGATGGCGATGTGTAAGGAAGGAGGAACAGGAGC
TTCAGTCAAATATATTAATCCTTCAGATAATAGAGGAGCAGGCTCATGGGTCGGTCATCAATTATCGGATGATCCTGACG
GCACAAGAATACAATTTATCATCGATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.116

85.211

0.563

Multiple sequence alignment