Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NSQ46_RS10605 Genome accession   NZ_CP152008
Coordinates   2226987..2227940 (+) Length   317 a.a.
NCBI ID   WP_007132170.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL M8-0142     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2221987..2232940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ46_RS10580 (NSQ46_10580) - 2223019..2223741 (-) 723 WP_007132175.1 class I SAM-dependent methyltransferase -
  NSQ46_RS10585 (NSQ46_10585) - 2223881..2224579 (+) 699 WP_028405362.1 nucleotidyltransferase domain-containing protein -
  NSQ46_RS10590 (NSQ46_10590) - 2224696..2224794 (+) 99 WP_007132173.1 sporulation protein YjcZ -
  NSQ46_RS10595 (NSQ46_10595) - 2224869..2225474 (-) 606 WP_028405361.1 YkoF family thiamine/hydroxymethylpyrimidine-binding protein -
  NSQ46_RS10600 (NSQ46_10600) - 2225852..2226454 (-) 603 WP_028405360.1 nitroreductase family protein -
  NSQ46_RS10605 (NSQ46_10605) ceuB 2226987..2227940 (+) 954 WP_007132170.1 ABC transporter permease Machinery gene
  NSQ46_RS10610 (NSQ46_10610) - 2227930..2228877 (+) 948 WP_007132169.1 iron chelate uptake ABC transporter family permease subunit -
  NSQ46_RS10615 (NSQ46_10615) - 2228874..2229632 (+) 759 WP_028405359.1 ABC transporter ATP-binding protein -
  NSQ46_RS10620 (NSQ46_10620) - 2229997..2230959 (+) 963 WP_144869136.1 siderophore ABC transporter substrate-binding protein -
  NSQ46_RS10625 (NSQ46_10625) - 2231373..2232797 (+) 1425 WP_144869133.1 NAD-dependent succinate-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34736.04 Da        Isoelectric Point: 9.7880

>NTDB_id=984575 NSQ46_RS10605 WP_007132170.1 2226987..2227940(+) (ceuB) [Paenibacillus sp. FSL M8-0142]
MKIIYLAAAVVALSIVSLFIGVKDISPLDLFSMTEQQQHIMLVSRLPRLVSLILAGVSMSICGLIMQQLSRNKFVSPTTA
GTMDSARLGILVAMLVFTTSGPLVKMLVAFVFALAGTFIFMKILDRIKFKDAIFIPLVGLMFGNIVSSIATFFAYKYDLI
QNMSAWLQGDFSMIIKGQYELLYISVPLVILAYLFANKFTVAGMGEEFATNLGLHYRRVVNLGLVIVALVTASVVLTVGV
IPFLGLIIPNIVSLYLGDHLKKSLSHTALLGAGFVLFCDILGRIIIYPYEIPISLTVGVLGSGIFIYLLMRRKAYDL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=984575 NSQ46_RS10605 WP_007132170.1 2226987..2227940(+) (ceuB) [Paenibacillus sp. FSL M8-0142]
ATGAAGATCATTTACTTAGCCGCAGCCGTTGTGGCGCTTTCCATCGTCTCCTTATTTATCGGAGTCAAGGATATTTCGCC
GCTGGACTTATTCTCCATGACGGAACAACAACAGCATATTATGCTCGTCAGCCGCTTGCCGCGTCTAGTCAGTCTAATTC
TGGCGGGAGTCAGCATGAGTATCTGCGGATTGATCATGCAGCAGCTTAGCCGCAACAAATTCGTATCGCCGACAACGGCG
GGAACCATGGATTCCGCAAGACTGGGAATTCTCGTTGCGATGCTCGTATTCACGACAAGCGGACCGCTTGTGAAAATGCT
GGTGGCTTTTGTATTCGCTCTGGCCGGCACGTTTATCTTCATGAAGATCCTGGACCGGATCAAGTTCAAGGATGCGATCT
TTATTCCGCTCGTTGGACTCATGTTCGGGAACATCGTAAGCTCGATCGCTACGTTCTTCGCTTATAAATATGATCTCATT
CAGAACATGTCCGCATGGCTTCAAGGCGATTTTTCCATGATCATCAAGGGACAGTACGAACTTCTGTATATCAGCGTTCC
GCTGGTCATTCTGGCCTACCTGTTCGCCAACAAATTCACGGTTGCCGGCATGGGTGAGGAATTCGCCACGAACCTTGGAC
TTCATTACCGGCGCGTCGTTAATTTGGGCTTGGTCATTGTAGCGCTGGTAACCGCATCCGTCGTGTTGACGGTCGGCGTG
ATTCCTTTTCTCGGTTTGATCATACCGAATATTGTAAGCCTGTATCTGGGAGACCATTTGAAAAAAAGCCTTTCCCATAC
CGCGCTGCTAGGGGCCGGATTCGTTCTGTTCTGCGATATCCTTGGCCGGATCATCATATACCCATACGAAATTCCGATCA
GTCTGACCGTGGGCGTGCTCGGAAGCGGTATTTTCATTTACTTACTGATGAGGAGAAAGGCTTATGACTTATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.839

97.792

0.536

Multiple sequence alignment