Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NSQ46_RS02895 Genome accession   NZ_CP152008
Coordinates   690808..692175 (+) Length   455 a.a.
NCBI ID   WP_007132595.1    Uniprot ID   G4HN83
Organism   Paenibacillus sp. FSL M8-0142     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 685808..697175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ46_RS02880 (NSQ46_02880) - 686112..686636 (+) 525 WP_007132598.1 UvrB/UvrC motif-containing protein -
  NSQ46_RS02885 (NSQ46_02885) - 686678..687745 (+) 1068 WP_144873031.1 protein arginine kinase -
  NSQ46_RS02890 (NSQ46_02890) clpC 687950..690406 (+) 2457 WP_007132596.1 ATP-dependent protease ATP-binding subunit ClpC -
  NSQ46_RS02895 (NSQ46_02895) radA 690808..692175 (+) 1368 WP_007132595.1 DNA repair protein RadA Machinery gene
  NSQ46_RS02900 (NSQ46_02900) disA 692189..693265 (+) 1077 WP_007132594.1 DNA integrity scanning diadenylate cyclase DisA -
  NSQ46_RS02905 (NSQ46_02905) pssA 693325..694056 (+) 732 WP_007132593.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  NSQ46_RS02910 (NSQ46_02910) - 694241..694636 (-) 396 WP_007132592.1 hypothetical protein -
  NSQ46_RS02915 (NSQ46_02915) - 694913..696001 (+) 1089 WP_007132591.1 PIN/TRAM domain-containing protein -
  NSQ46_RS02920 (NSQ46_02920) ispD 696077..696775 (+) 699 WP_144870422.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49482.21 Da        Isoelectric Point: 7.1656

>NTDB_id=984571 NSQ46_RS02895 WP_007132595.1 690808..692175(+) (radA) [Paenibacillus sp. FSL M8-0142]
MAKTKTKFFCTECGYEAPKWFGKCPGCQSWNSMVEETETVIKTQGMNSPLFHSKEKPLSIINIESGKEPRIQTGIAELNR
VLGGGLVPGSLVLVGGDPGIGKSTLLLQASNRLAQSGIRVLYISGEESVRQTKLRADRLGALSPELFVLCETNLESIEEA
VESVQPGFVVIDSIQTVYLPEVTSAPGSVSQVRECTSRFMRLAKVKGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMGEDGLREVGNPSELFLSERPLGVAGSTVVASMEGTRPVLVELQALISTTHFPS
PRRMGTGVDHHRMNLIIAVLEKRMGMFLQTQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDIPTKPYDVIFGEVGLTGE
VRAVSRAEQRVKEAEKLGFKRVILPEKSLKGWKHPKGIEIIGVNTVADALAVALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=984571 NSQ46_RS02895 WP_007132595.1 690808..692175(+) (radA) [Paenibacillus sp. FSL M8-0142]
ATGGCCAAAACTAAGACGAAATTTTTCTGTACCGAATGCGGCTATGAAGCGCCGAAATGGTTCGGGAAATGTCCGGGCTG
TCAATCATGGAATTCCATGGTAGAGGAGACCGAGACGGTAATCAAGACGCAGGGGATGAATTCCCCTCTTTTTCATAGTA
AAGAAAAGCCCCTTTCCATCATAAATATAGAGAGCGGAAAGGAACCGAGAATCCAGACGGGGATTGCGGAATTGAACCGT
GTGCTCGGCGGCGGGCTCGTTCCCGGATCGCTCGTGCTGGTTGGAGGAGACCCCGGCATCGGGAAATCGACGCTGCTGCT
GCAAGCCTCGAACCGTTTGGCGCAAAGCGGCATCCGCGTCCTGTATATATCGGGTGAGGAATCGGTTCGGCAAACGAAGC
TTCGGGCCGACCGGCTCGGCGCGCTGTCGCCGGAGCTGTTCGTCCTCTGCGAAACGAACCTGGAATCGATCGAGGAAGCG
GTGGAGAGCGTTCAGCCGGGTTTTGTCGTGATCGACTCCATTCAAACGGTATACCTGCCGGAGGTCACGAGTGCGCCGGG
AAGCGTATCCCAGGTTCGGGAATGCACCTCCCGATTCATGCGTCTGGCGAAGGTGAAGGGCATTGCCACGGTGCTGGTCG
GCCACGTGACCAAGGAAGGGGCCATTGCAGGGCCGCGGATGCTGGAGCATATGGTGGATTGCGTGCTTTACTTTGAAGGA
GAGCGGCATCATACGTACCGCCTGCTGCGTGCGGTCAAGAACCGCTTCGGTTCGACAAATGAGATCGGCATATTTGAAAT
GGGAGAGGACGGTCTGCGTGAAGTGGGTAACCCGTCCGAGCTGTTCCTCTCCGAGCGTCCGCTAGGCGTAGCCGGGTCGA
CCGTCGTTGCCAGCATGGAGGGAACGCGTCCTGTGCTCGTGGAGCTTCAGGCGCTTATATCCACGACGCATTTTCCGTCA
CCGAGACGGATGGGCACAGGCGTCGACCATCATCGCATGAACCTGATTATCGCCGTGCTGGAGAAACGGATGGGCATGTT
CCTGCAGACGCAGGACGCCTATTTGAATGTGGCCGGCGGCGTCAAGCTGGATGAGCCTGCCGTCGATTTGGCGATCGCTG
TCAGCATCGCATCCAGCTTTCGCGATATTCCGACCAAGCCGTATGATGTTATCTTCGGCGAGGTCGGGCTGACCGGCGAG
GTTCGCGCCGTTTCCCGGGCGGAGCAAAGGGTGAAGGAAGCCGAGAAGCTCGGCTTCAAACGCGTGATTTTACCAGAGAA
GAGCTTGAAGGGGTGGAAGCACCCCAAAGGAATTGAAATTATCGGAGTTAATACCGTTGCAGATGCATTAGCGGTTGCGT
TAGATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-220)

Subunit ChlI of Mg-chelatase (ChlI)

(346-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4HN83

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.32

100

0.679
  radA Streptococcus mitis NCTC 12261

58.889

98.901

0.582
  radA Streptococcus pneumoniae Rx1

58.889

98.901

0.582
  radA Streptococcus pneumoniae D39

58.889

98.901

0.582
  radA Streptococcus pneumoniae R6

58.889

98.901

0.582
  radA Streptococcus pneumoniae TIGR4

58.889

98.901

0.582
  radA Streptococcus mitis SK321

58.667

98.901

0.58

Multiple sequence alignment