Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MKY80_RS22570 Genome accession   NZ_CP152004
Coordinates   4532525..4533901 (-) Length   458 a.a.
NCBI ID   WP_008180607.1    Uniprot ID   -
Organism   Lysinibacillus sp. FSL R5-0849     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4527525..4538901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY80_RS22550 (MKY80_22550) gltX 4528103..4529563 (-) 1461 WP_342531293.1 glutamate--tRNA ligase -
  MKY80_RS22555 (MKY80_22555) ispF 4529652..4530128 (-) 477 WP_008180601.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MKY80_RS22560 (MKY80_22560) ispD 4530515..4531210 (-) 696 WP_171365827.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MKY80_RS22565 (MKY80_22565) - 4531222..4532307 (-) 1086 WP_008180605.1 PIN/TRAM domain-containing protein -
  MKY80_RS22570 (MKY80_22570) radA 4532525..4533901 (-) 1377 WP_008180607.1 DNA repair protein RadA Machinery gene
  MKY80_RS22575 (MKY80_22575) - 4533993..4536437 (-) 2445 WP_008180611.1 ATP-dependent Clp protease ATP-binding subunit -
  MKY80_RS22580 (MKY80_22580) - 4536427..4537536 (-) 1110 WP_089986402.1 protein arginine kinase -
  MKY80_RS22585 (MKY80_22585) - 4537533..4538075 (-) 543 WP_025116467.1 UvrB/UvrC motif-containing protein -
  MKY80_RS22590 (MKY80_22590) - 4538089..4538559 (-) 471 WP_025116468.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50197.03 Da        Isoelectric Point: 7.3825

>NTDB_id=984470 MKY80_RS22570 WP_008180607.1 4532525..4533901(-) (radA) [Lysinibacillus sp. FSL R5-0849]
MAKKKTKFVCSGCGYESAKWMGRCPGCGEWNKMVEEVEVIAKGPRGAFQHSATVTQKAIPIIQVEASEESRVATEMGELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLSNKGHRVLYISGEESIRQTKLRAERLGVISQELYIYSETNLEFLNQ
TIEEVQPKFVIVDSIQTVFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHNHRILRSQKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSQGAAGSTIVASMEGTRPILVEIQSLVTPTSFN
YPKRMATGVDQNRVQLLMAVLEKRMGLMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQAVRATDCFVGEVGLTG
EVRRVSRIEQRVIEAAKLGFKRVFIPTSNIGGWDFPQGIEIIGVETIKDALNACFREL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=984470 MKY80_RS22570 WP_008180607.1 4532525..4533901(-) (radA) [Lysinibacillus sp. FSL R5-0849]
TTGGCAAAGAAAAAAACGAAATTTGTATGTTCAGGCTGTGGCTATGAATCAGCAAAATGGATGGGAAGATGTCCAGGGTG
TGGGGAATGGAATAAGATGGTGGAGGAAGTAGAAGTGATTGCGAAAGGACCACGTGGGGCTTTCCAGCATTCTGCTACTG
TTACTCAAAAGGCAATCCCTATCATTCAGGTGGAGGCTAGTGAAGAGTCCCGTGTAGCGACAGAAATGGGCGAGCTGAAC
CGTGTATTAGGCGGCGGTATTGTGCCTGGCTCTCTAGTATTAATAGGTGGTGATCCAGGGATTGGGAAATCCACTTTATT
ACTACAAGTTTCAGCCTTGCTCTCTAATAAAGGTCATCGTGTGCTGTATATTTCTGGTGAGGAATCTATCCGTCAAACGA
AGCTACGTGCGGAGCGTTTGGGGGTAATTTCACAAGAGCTGTATATTTATTCTGAAACAAATCTTGAGTTTTTGAATCAA
ACGATTGAGGAAGTACAGCCGAAATTTGTCATTGTTGATTCCATACAAACCGTCTTTCATCCAGAGGTAACAAGTGCGCC
AGGTAGTGTCTCACAGGTCCGTGAGTGTACAGCTGAGCTTATGCGAATTGCTAAGACAAAAGGAATTGCGATCTTCTTAG
TTGGGCATGTTACGAAAGAGGGGCAAATAGCAGGGCCTCGTATTTTAGAGCATATGGTGGATACAGTCCTGTATTTTGAA
GGGGAAAGGCATCATAATCATCGTATTTTACGAAGTCAAAAGAACCGCTTCGGCTCTACAAATGAAATTGCTATATTCGA
AATGCTACAGGGTGGGCTAAAAGAGGTTTTGAACCCATCTGAGCTGTTTTTACAGGAGCGTTCACAAGGAGCTGCGGGCT
CCACGATTGTTGCCTCAATGGAGGGAACAAGGCCAATTCTCGTTGAAATTCAGTCGCTCGTAACGCCTACCAGCTTTAAT
TACCCTAAGCGGATGGCAACAGGGGTTGATCAAAATAGAGTGCAATTACTGATGGCCGTACTTGAAAAGCGTATGGGTCT
CATGCTACAAGCGCAGGATGCATATATTAAAGTTGCTGGTGGTGTGAAATTGGACGAACCCGCCATCGATTTAGCTGTTC
TGACAAGCATCGTTTCTAGCTTTAAGGATCAGGCTGTGCGAGCAACGGATTGCTTTGTTGGTGAGGTAGGTCTGACAGGA
GAGGTGCGCCGAGTATCCCGTATTGAGCAACGTGTCATTGAAGCAGCGAAGCTTGGTTTTAAAAGAGTATTCATTCCTAC
ATCCAATATAGGTGGATGGGATTTTCCACAAGGGATTGAAATTATCGGGGTAGAAACGATAAAGGATGCATTAAATGCCT
GCTTTAGAGAGTTATAG

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(350-432)

AAA domain (AAA_25)

(66-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.925

99.127

0.703
  radA Streptococcus pneumoniae Rx1

63.158

99.563

0.629
  radA Streptococcus pneumoniae D39

63.158

99.563

0.629
  radA Streptococcus pneumoniae R6

63.158

99.563

0.629
  radA Streptococcus pneumoniae TIGR4

63.158

99.563

0.629
  radA Streptococcus mitis NCTC 12261

63.158

99.563

0.629
  radA Streptococcus mitis SK321

63.158

99.563

0.629

Multiple sequence alignment