Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MKY80_RS21210 Genome accession   NZ_CP152004
Coordinates   4285624..4286574 (-) Length   316 a.a.
NCBI ID   WP_089985785.1    Uniprot ID   -
Organism   Lysinibacillus sp. FSL R5-0849     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4280624..4291574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY80_RS21180 (MKY80_21180) - 4280634..4281536 (-) 903 WP_089985782.1 polyprenyl synthetase family protein -
  MKY80_RS21185 (MKY80_21185) - 4281875..4282414 (+) 540 WP_342531091.1 hypothetical protein -
  MKY80_RS21190 (MKY80_21190) - 4282519..4282833 (-) 315 WP_008175171.1 antibiotic biosynthesis monooxygenase -
  MKY80_RS21195 (MKY80_21195) - 4282835..4283854 (-) 1020 WP_089985784.1 siderophore ABC transporter substrate-binding protein -
  MKY80_RS21200 (MKY80_21200) - 4283920..4284681 (-) 762 WP_008175175.1 ABC transporter ATP-binding protein -
  MKY80_RS21205 (MKY80_21205) - 4284678..4285631 (-) 954 WP_008175176.1 iron chelate uptake ABC transporter family permease subunit -
  MKY80_RS21210 (MKY80_21210) ceuB 4285624..4286574 (-) 951 WP_089985785.1 ABC transporter permease Machinery gene
  MKY80_RS21215 (MKY80_21215) - 4286860..4287912 (-) 1053 WP_008175178.1 hypothetical protein -
  MKY80_RS21220 (MKY80_21220) menC 4287953..4289059 (-) 1107 WP_043989909.1 o-succinylbenzoate synthase -
  MKY80_RS21225 (MKY80_21225) - 4289081..4289905 (-) 825 WP_008175180.1 GNAT family N-acetyltransferase -
  MKY80_RS21230 (MKY80_21230) - 4289905..4291050 (-) 1146 WP_036121158.1 M20 peptidase aminoacylase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34854.08 Da        Isoelectric Point: 10.1462

>NTDB_id=984469 MKY80_RS21210 WP_089985785.1 4285624..4286574(-) (ceuB) [Lysinibacillus sp. FSL R5-0849]
MKIRYLLTATVVLSIVSLFIGVVDIKPFDLLDFQSEETRLFLISRVPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATRLGILISMMFFTNVTYFQKISFAFIFALAGTLLFMQILNRIKFKDAIFIPLIGLMYGNILSSVTTFFAYKANII
QNISAWLQGDFSLIMKGRYELLYISVPVLILAYIYANRFTVAGMGEDFAKNLGLSYKFVVNLGLVLVALISTTVVLTVGV
IPFLGLIIPNIISLFKGDNLAKTLPHTALLGMSFLLFCDILGRVLIFPYEIPISMTVGVIGSAIFLVMLFRGRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=984469 MKY80_RS21210 WP_089985785.1 4285624..4286574(-) (ceuB) [Lysinibacillus sp. FSL R5-0849]
ATGAAAATAAGATATCTTTTAACAGCAACTGTTGTGTTGTCTATAGTATCGCTATTTATCGGAGTAGTAGATATTAAACC
ATTTGATCTATTAGACTTCCAATCAGAAGAAACTAGACTATTTTTAATTAGTCGTGTACCTAGACTTGTTGCTATTTTGC
TAGCAGGTGCAGGTATGAGTATTGCTGGTTTAATTATGCAAAGCTTAAGTAGGAATAAGTTCGTATCACCAACGACAGCA
GGTACTTTAGATGCCACTCGACTGGGTATATTGATTTCCATGATGTTTTTCACAAATGTCACGTATTTCCAGAAAATTTC
CTTCGCTTTCATATTTGCTTTAGCCGGCACATTATTATTTATGCAAATATTAAATCGAATTAAGTTTAAAGATGCGATTT
TTATACCGCTTATTGGCTTAATGTATGGTAATATCCTGTCTTCCGTAACAACGTTCTTTGCTTATAAGGCAAATATTATC
CAAAACATTTCTGCATGGTTACAAGGAGATTTCTCATTAATCATGAAAGGCCGTTATGAACTGTTATACATAAGTGTACC
AGTACTTATTTTAGCTTATATTTATGCCAATCGTTTTACAGTAGCCGGTATGGGTGAGGATTTTGCTAAAAATCTTGGTC
TATCCTATAAGTTTGTGGTGAATTTAGGCTTAGTATTGGTGGCTCTTATCTCCACAACAGTGGTGCTAACAGTCGGTGTC
ATTCCATTCCTTGGCTTGATCATACCGAATATTATTTCACTGTTTAAAGGTGACAATTTGGCAAAAACATTGCCGCATAC
AGCATTACTTGGTATGTCATTCTTATTATTCTGCGATATTTTAGGACGCGTACTGATTTTCCCTTATGAGATACCAATTA
GTATGACTGTTGGTGTAATTGGAAGTGCCATCTTCCTAGTCATGTTGTTTAGGGGGAGAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.532

100

0.525

Multiple sequence alignment