Detailed information
Bioinformatically predicted
Overview
| Name | rcrQ | Type | Regulator |
| Locus tag | R8559_RS09350 | Genome accession | NZ_AP026926 |
| Coordinates | 1795556..1796587 (-) | Length | 343 a.a. |
| NCBI ID | WP_000346795.1 | Uniprot ID | - |
| Organism | Streptococcus pneumoniae strain PZ900700119 | ||
| Function | regulate competence (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1782322..1808891 | 1795556..1796587 | within | 0 |
Gene organization within MGE regions
Location: 1782322..1808891
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R8559_RS09250 (PC0116_18190) | - | 1782322..1783098 (+) | 777 | WP_001086341.1 | aminoglycoside 3'-phosphotransferase | - |
| R8559_RS09255 (PC0116_18200) | recX | 1783108..1783884 (+) | 777 | WP_000705114.1 | recombination regulator RecX | - |
| R8559_RS09260 (PC0116_18210) | - | 1783973..1784506 (+) | 534 | WP_000775321.1 | DUF402 domain-containing protein | - |
| R8559_RS11615 (PC0116_18220) | - | 1784864..1785070 (-) | 207 | WP_000775827.1 | transcriptional regulator | - |
| R8559_RS09270 (PC0116_18230) | - | 1785230..1786459 (+) | 1230 | WP_000436324.1 | ISL3 family transposase | - |
| R8559_RS09275 (PC0116_18240) | groL | 1786558..1788180 (-) | 1623 | WP_000031585.1 | chaperonin GroEL | - |
| R8559_RS09280 (PC0116_18250) | groES | 1788196..1788480 (-) | 285 | WP_000917330.1 | co-chaperone GroES | - |
| R8559_RS09285 (PC0116_18260) | ssbB/cilA | 1788750..1789145 (-) | 396 | WP_000282467.1 | single-stranded DNA-binding protein | Machinery gene |
| R8559_RS09290 (PC0116_18270) | - | 1789223..1789984 (-) | 762 | WP_001107757.1 | SDR family oxidoreductase | - |
| R8559_RS09295 (PC0116_18280) | ytpR | 1790017..1790643 (-) | 627 | WP_000578302.1 | YtpR family tRNA-binding protein | - |
| R8559_RS09300 (PC0116_18290) | - | 1790659..1790976 (-) | 318 | WP_000615774.1 | thioredoxin family protein | - |
| R8559_RS09305 (PC0116_18300) | - | 1790973..1791272 (-) | 300 | WP_001818001.1 | DUF4651 domain-containing protein | - |
| R8559_RS09310 (PC0116_18310) | - | 1791455..1792711 (+) | 1257 | WP_000436627.1 | ISL3 family transposase | - |
| R8559_RS09315 | - | 1792788..1792919 (+) | 132 | WP_001811306.1 | hypothetical protein | - |
| R8559_RS09325 | - | 1793031..1793176 (-) | 146 | Protein_1827 | cell wall-binding protein | - |
| R8559_RS09330 (PC0116_18320) | - | 1793388..1794062 (-) | 675 | WP_000725722.1 | LiaF transmembrane domain-containing protein | - |
| R8559_RS09335 (PC0116_18330) | - | 1794068..1794514 (-) | 447 | WP_000776589.1 | LytTR family DNA-binding domain-containing protein | - |
| R8559_RS09340 | - | 1794628..1795131 (-) | 504 | WP_000800939.1 | phosphatase PAP2 family protein | - |
| R8559_RS09345 (PC0116_18340) | - | 1795128..1795490 (-) | 363 | WP_000078805.1 | DUF2200 domain-containing protein | - |
| R8559_RS09350 (PC0116_18350) | rcrQ | 1795556..1796587 (-) | 1032 | WP_000346795.1 | ABC transporter ATP-binding protein | Regulator |
| R8559_RS09355 (PC0116_18360) | rcrP | 1796594..1797415 (-) | 822 | WP_000601691.1 | ABC transporter permease | Regulator |
| R8559_RS09360 (PC0116_18370) | - | 1797432..1797902 (-) | 471 | WP_000360532.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| R8559_RS09365 (PC0116_18380) | - | 1798026..1798742 (-) | 717 | WP_000532874.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| R8559_RS09370 (PC0116_18390) | ply | 1799623..1801038 (-) | 1416 | WP_001284359.1 | cholesterol-dependent cytolysin pneumolysin | - |
| R8559_RS09375 (PC0116_18400) | - | 1801049..1801459 (-) | 411 | WP_000595757.1 | hypothetical protein | - |
| R8559_RS09380 (PC0116_18410) | - | 1801452..1802060 (-) | 609 | WP_000083614.1 | hypothetical protein | - |
| R8559_RS09385 (PC0116_18420) | - | 1802073..1802531 (-) | 459 | WP_000186955.1 | DUF4231 domain-containing protein | - |
| R8559_RS11620 (PC0116_18430) | - | 1802656..1802787 (+) | 132 | WP_000997307.1 | hypothetical protein | - |
| R8559_RS09390 (PC0116_18440) | - | 1802765..1803055 (+) | 291 | Protein_1841 | transposase family protein | - |
| R8559_RS09395 (PC0116_18450) | - | 1803532..1804365 (+) | 834 | WP_001842125.1 | glycerophosphodiester phosphodiesterase family protein | - |
| R8559_RS09400 (PC0116_18460) | - | 1804400..1805461 (+) | 1062 | WP_000475762.1 | extracellular solute-binding protein | - |
| R8559_RS09405 (PC0116_18470) | - | 1805478..1806482 (+) | 1005 | WP_000627602.1 | ABC transporter ATP-binding protein | - |
| R8559_RS09410 (PC0116_18480) | - | 1806494..1808188 (+) | 1695 | WP_001232290.1 | iron ABC transporter permease | - |
| R8559_RS09415 (PC0116_18490) | - | 1808190..1808891 (+) | 702 | WP_001054457.1 | MgtC/SapB family protein | - |
Sequence
Protein
Download Length: 343 a.a. Molecular weight: 37976.15 Da Isoelectric Point: 4.4400
>NTDB_id=98446 R8559_RS09350 WP_000346795.1 1795556..1796587(-) (rcrQ) [Streptococcus pneumoniae strain PZ900700119]
MDFLLMGALFIVLPRTMVSAKRINQVLDLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSTGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSATAHAGQKVAIVGPTGTGKTTIVNLLMKFYEIDKGSIHI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEE
LMAQGGFYADLYNSQFTEDEAEE
MDFLLMGALFIVLPRTMVSAKRINQVLDLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSTGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSATAHAGQKVAIVGPTGTGKTTIVNLLMKFYEIDKGSIHI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEE
LMAQGGFYADLYNSQFTEDEAEE
Nucleotide
Download Length: 1032 bp
>NTDB_id=98446 R8559_RS09350 WP_000346795.1 1795556..1796587(-) (rcrQ) [Streptococcus pneumoniae strain PZ900700119]
ATGGACTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
AGATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTACAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGACAGCTCATGCTGGTCAAAAGGTTGCCATTGTTG
GGCCGACTGGGACTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCACATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCATTGCCCACC
GCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA
ATGGACTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
AGATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTACAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGACAGCTCATGCTGGTCAAAAGGTTGCCATTGTTG
GGCCGACTGGGACTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCACATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCATTGCCCACC
GCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rcrQ | Streptococcus mutans UA159 |
80.804 |
65.306 |
0.528 |
| rcrP | Streptococcus mutans UA159 |
37.791 |
100 |
0.379 |