Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MKY80_RS14415 Genome accession   NZ_CP152004
Coordinates   2945179..2946870 (-) Length   563 a.a.
NCBI ID   WP_008179907.1    Uniprot ID   -
Organism   Lysinibacillus sp. FSL R5-0849     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2940179..2951870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY80_RS14395 (MKY80_14395) - 2940637..2942208 (-) 1572 WP_008179917.1 FapA family protein -
  MKY80_RS14400 (MKY80_14400) - 2942542..2942727 (-) 186 WP_008179914.1 hypothetical protein -
  MKY80_RS14405 (MKY80_14405) spo0A 2942925..2943716 (-) 792 WP_008179911.1 sporulation transcription factor Spo0A -
  MKY80_RS14410 (MKY80_14410) - 2944110..2945057 (-) 948 WP_008179909.1 SpoIVB peptidase S55 domain-containing protein -
  MKY80_RS14415 (MKY80_14415) recN 2945179..2946870 (-) 1692 WP_008179907.1 DNA repair protein RecN Machinery gene
  MKY80_RS14420 (MKY80_14420) argR 2946904..2947353 (-) 450 WP_008179906.1 transcriptional regulator ArgR -
  MKY80_RS14425 (MKY80_14425) - 2947454..2948272 (-) 819 WP_008179905.1 TlyA family RNA methyltransferase -
  MKY80_RS14430 (MKY80_14430) dxs 2948272..2950173 (-) 1902 WP_043990667.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MKY80_RS14435 (MKY80_14435) - 2950335..2951216 (-) 882 WP_089986071.1 polyprenyl synthetase family protein -
  MKY80_RS14440 (MKY80_14440) xseB 2951220..2951453 (-) 234 WP_008179899.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63526.33 Da        Isoelectric Point: 4.6249

>NTDB_id=984459 MKY80_RS14415 WP_008179907.1 2945179..2946870(-) (recN) [Lysinibacillus sp. FSL R5-0849]
MLRELSIRNFAIIEDLTVSFSEGLTVLTGETGAGKSIIIDAVHLLAGGRGNTEFIRHGARKAELGGLFQISNSTHPVLKK
LEEAGIEIEEETVILRRDLNDSGKSICRVNGKLVPLSVLREIGGSLIDIHGQHENQELMDEKQHINLLDQFAEEQLLPIQ
KTYSEQYEEYRLLKKDLASISIDEQLMAQRIDLYQFQIKELEEANLRLGEEDELLDERRRLMNYNKIFERSSAAYEAIQG
ESKGLDWIGNAMGALDDAATVDEQFKEASEAVTSAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALFQNLKRKYGST
VEDILAYFEKIKIELNELLNRDEILQVKERRVLEMESVLNELATELSIVRKAAAQQLSEAIMAELRELHMEKAKFIVNFE
ELPYFDANGKDQIIFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
VSINSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLSEIDQKARIEEVSRMMSGTEITALTLQHATELLTMAEERKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=984459 MKY80_RS14415 WP_008179907.1 2945179..2946870(-) (recN) [Lysinibacillus sp. FSL R5-0849]
GTGTTAAGAGAGCTTAGTATTCGAAACTTTGCTATCATTGAGGATTTGACTGTGAGTTTTTCAGAAGGTTTGACTGTACT
AACGGGGGAAACTGGTGCTGGTAAATCTATTATCATTGATGCTGTTCATTTACTTGCTGGTGGACGGGGAAATACTGAAT
TTATTCGTCATGGGGCAAGAAAGGCTGAATTAGGTGGCTTATTTCAAATTTCGAATTCCACGCATCCTGTGCTGAAAAAA
TTAGAAGAAGCAGGCATTGAGATTGAAGAAGAGACAGTTATTTTACGTCGTGATTTAAATGATTCTGGGAAAAGTATTTG
CCGTGTAAATGGTAAACTTGTGCCATTATCAGTACTGAGAGAAATTGGTGGGAGTCTCATTGATATTCATGGCCAACATG
AAAACCAAGAGCTGATGGATGAAAAACAGCATATCAATTTACTCGACCAGTTTGCAGAAGAGCAGCTGCTACCTATTCAA
AAAACATACAGCGAACAATATGAAGAATATCGATTGCTGAAAAAGGACTTAGCCTCGATTTCCATCGATGAACAATTAAT
GGCACAACGCATTGATTTGTATCAATTCCAAATAAAAGAGCTAGAAGAAGCCAATTTAAGGCTAGGTGAGGAAGATGAAC
TTCTTGATGAACGCCGTCGTCTCATGAATTATAATAAAATTTTTGAACGTTCTAGTGCTGCCTATGAGGCCATTCAGGGA
GAATCAAAAGGTCTTGATTGGATTGGGAATGCAATGGGTGCTTTGGATGATGCAGCAACAGTTGACGAGCAATTTAAAGA
AGCTTCTGAGGCAGTGACATCGGCTTTTTATGCGCTACAAGATGCGGCTTATCAGGTCAAAAATGTATTAGATGAATTGG
AGTTTGATCCAGCGCGTTTAAATGAGGTAGAACAACGATTAGCACTATTCCAAAATTTAAAACGCAAATATGGTTCGACT
GTGGAGGACATTTTAGCGTATTTTGAAAAAATAAAAATAGAGTTAAATGAACTGCTAAATCGCGATGAAATTTTGCAGGT
GAAAGAACGAAGAGTGCTTGAAATGGAATCGGTTCTTAATGAGCTTGCTACAGAACTTTCAATTGTGCGTAAAGCTGCTG
CCCAACAGTTAAGTGAAGCCATTATGGCAGAGTTACGGGAATTACATATGGAAAAAGCTAAATTTATTGTCAATTTTGAA
GAATTACCATATTTCGATGCAAATGGAAAAGATCAAATTATTTTTTATATTTCTACCAATGTTGGAGAACCGCCAAAGTC
CTTACCGAAAATTGCCTCGGGAGGAGAATTATCACGAATGATGCTGGCGCTGAAAACTATTTTCTCTTCTTCTAATGGTA
TCACATCCATCATTTTTGATGAAGTGGACACAGGAGTTAGTGGAAGAGTGGCACAAGCCATTGCAGAAAAAATTGCTGCG
GTATCCATTAATTCTCAAGTGCTATGTATTTCACATTTACCTCAAGTAGCTGCGATGGCTGATCATCATTACTTCATTAA
GAAAGAAGTCGAGCATGATCGAACATTTACGTCTTTATCAGAAATTGATCAAAAGGCACGAATTGAAGAAGTCAGCCGTA
TGATGTCTGGAACAGAAATTACGGCTTTAACACTACAGCATGCAACGGAGTTATTAACAATGGCAGAAGAGCGTAAAAAA
CAAATGCGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.206

100

0.545

Multiple sequence alignment