Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NST84_RS22420 Genome accession   NZ_CP152002
Coordinates   5189721..5190158 (+) Length   145 a.a.
NCBI ID   WP_342562350.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R7-0345     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 5184721..5195158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST84_RS22385 (NST84_22385) - 5184884..5185564 (-) 681 WP_342562343.1 M15 family metallopeptidase -
  NST84_RS22390 (NST84_22390) - 5185711..5185893 (-) 183 WP_342562344.1 hypothetical protein -
  NST84_RS22395 (NST84_22395) - 5186021..5186182 (+) 162 WP_342562345.1 hypothetical protein -
  NST84_RS22400 (NST84_22400) - 5186186..5186515 (-) 330 WP_342562346.1 YolD-like family protein -
  NST84_RS22405 (NST84_22405) - 5186741..5187400 (-) 660 WP_342562347.1 hypothetical protein -
  NST84_RS22410 (NST84_22410) - 5187560..5189023 (-) 1464 WP_342562348.1 glycosyl hydrolase -
  NST84_RS22415 (NST84_22415) - 5189161..5189580 (-) 420 WP_342562349.1 cytidine deaminase -
  NST84_RS22420 (NST84_22420) nucA/comI 5189721..5190158 (+) 438 WP_342562350.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NST84_RS22425 (NST84_22425) - 5190566..5190742 (+) 177 WP_342562351.1 YjfB family protein -
  NST84_RS22430 (NST84_22430) - 5190863..5191405 (+) 543 WP_342562352.1 ImmA/IrrE family metallo-endopeptidase -
  NST84_RS22435 (NST84_22435) - 5191451..5191609 (+) 159 WP_342562353.1 hypothetical protein -
  NST84_RS22440 (NST84_22440) - 5191747..5192523 (-) 777 WP_342562354.1 2-phosphosulfolactate phosphatase -
  NST84_RS22445 (NST84_22445) - 5192715..5192849 (-) 135 WP_139172006.1 hypothetical protein -
  NST84_RS22450 (NST84_22450) - 5192948..5193784 (-) 837 WP_342562355.1 YitT family protein -
  NST84_RS22455 (NST84_22455) - 5193932..5194339 (-) 408 WP_342562356.1 hypothetical protein -
  NST84_RS22460 (NST84_22460) - 5194447..5194941 (-) 495 WP_342562357.1 DedA family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15858.79 Da        Isoelectric Point: 4.3417

>NTDB_id=984368 NST84_RS22420 WP_342562350.1 5189721..5190158(+) (nucA/comI) [Paenibacillus sp. FSL R7-0345]
MKKQKIIPSLIIVVLLALAAYLFEENGPSVTTPSTGDAEVVQLVFPSDRYPETAEHIQDAIRNGESAVCTISREDAEENR
KESLKGVPTKKGYDRDEWPMAMCAEGGAGADIEYITPSDNRGAGSWVGNQLEGYADGTRVEFMFK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=984368 NST84_RS22420 WP_342562350.1 5189721..5190158(+) (nucA/comI) [Paenibacillus sp. FSL R7-0345]
GTGAAAAAACAGAAAATCATCCCCAGTCTTATTATCGTTGTTCTGCTGGCCTTGGCAGCCTACTTGTTTGAAGAGAACGG
CCCGTCCGTAACAACGCCGTCCACCGGAGATGCCGAGGTAGTGCAGCTGGTCTTCCCCTCAGACCGTTATCCTGAAACAG
CGGAGCACATCCAGGACGCGATCCGGAACGGCGAGTCAGCGGTCTGTACGATCAGCCGTGAGGATGCGGAGGAGAACCGC
AAGGAATCGCTCAAAGGGGTGCCCACCAAAAAAGGCTATGACCGCGATGAGTGGCCGATGGCTATGTGTGCTGAAGGCGG
TGCCGGAGCTGATATTGAATACATAACCCCAAGCGACAACCGCGGTGCAGGCAGCTGGGTAGGCAACCAGCTTGAAGGCT
ATGCCGACGGAACACGGGTAGAGTTTATGTTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.932

71.034

0.49

Multiple sequence alignment