Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NST84_RS14720 Genome accession   NZ_CP152002
Coordinates   3466504..3468255 (-) Length   583 a.a.
NCBI ID   WP_342566283.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R7-0345     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3461504..3473255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST84_RS14705 (NST84_14705) - 3461995..3463083 (+) 1089 WP_342566280.1 glycosyltransferase family 4 protein -
  NST84_RS14710 (NST84_14710) cls 3463244..3464686 (+) 1443 WP_342566281.1 cardiolipin synthase -
  NST84_RS14715 (NST84_14715) rcrQ 3464744..3466504 (-) 1761 WP_342566282.1 ABC transporter ATP-binding protein Regulator
  NST84_RS14720 (NST84_14720) rcrP 3466504..3468255 (-) 1752 WP_342566283.1 ABC transporter ATP-binding protein Regulator
  NST84_RS14725 (NST84_14725) - 3468370..3469446 (-) 1077 WP_342566284.1 HAMP domain-containing sensor histidine kinase -
  NST84_RS14730 (NST84_14730) - 3469443..3470117 (-) 675 WP_342566285.1 response regulator transcription factor -
  NST84_RS14735 (NST84_14735) - 3470273..3470440 (+) 168 WP_342566286.1 hypothetical protein -
  NST84_RS14740 (NST84_14740) - 3470542..3471177 (-) 636 WP_342566287.1 TetR/AcrR family transcriptional regulator -
  NST84_RS14745 (NST84_14745) - 3471170..3472372 (-) 1203 WP_342566288.1 MFS transporter -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 63641.84 Da        Isoelectric Point: 6.5172

>NTDB_id=984364 NST84_RS14720 WP_342566283.1 3466504..3468255(-) (rcrP) [Paenibacillus sp. FSL R7-0345]
MLKLLKNLEPKEWALFAISVLFIVAQVWLDLELPDYMSDITRLIQTPGSEMSEIAATGAWMLLCALGSLATSIIVAGIAA
KIAANFSARVRSRLFNKVQSFSMEEINSFSTASLITRSTNDITQVQMLIVIGLQLLIKAPLLAVWAILKITGKSWEWSLA
TGAAVGVLIVIVGICVVLVMPKFQKLQVLTDNLNRVARENLTGLRVIRAYNAEKYQEEKFGAANNELTRTNLFANNVLSA
MMPSITLIMSGLSLAIYWIGAVMIQSADAGAKMGLFSDMIVFSSYAMQVVMAFMMLIIIFILLPRAHVSAKRINEVLDTK
PSLTDGSLTASPSRHAGEVEFRNVSFKYPDAEDYVLKDISFTAKKGETVAFIGSTGCGKSTVVNLIPRFYDATSGEILVG
GVNVNQYEQSALRNKMGYVSQKAVLFGGTVTSNIAFGDNGRDLNSDVVDAVYTSQAADFVEKMDGSYDAHIAQGGTNLSG
GQKQRLSIARAIARRPEILIFDDSFSALDYKTDRKLRSELKKESRGTTMLIVAQRIGTIKDADNIIVLEAGQIAGMGTHD
ELMESCSIYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=984364 NST84_RS14720 WP_342566283.1 3466504..3468255(-) (rcrP) [Paenibacillus sp. FSL R7-0345]
ATGCTTAAACTGCTGAAAAATCTTGAGCCGAAGGAATGGGCTTTGTTCGCAATCAGCGTCCTGTTCATCGTCGCTCAGGT
CTGGCTCGATCTGGAGCTGCCCGATTATATGAGCGATATTACCCGGCTGATTCAGACACCCGGAAGTGAGATGTCCGAGA
TCGCCGCGACAGGCGCCTGGATGCTGCTCTGTGCGCTGGGAAGTCTGGCCACCTCGATTATTGTAGCCGGGATCGCGGCA
AAAATTGCTGCTAACTTCTCTGCCAGAGTCCGCTCCAGACTGTTCAACAAGGTGCAATCCTTCTCAATGGAGGAGATCAA
CAGCTTTTCAACCGCCAGTCTGATTACCCGTTCAACCAATGACATTACCCAGGTACAGATGCTGATCGTCATCGGCCTGC
AGCTGTTGATCAAGGCTCCGCTGCTTGCCGTATGGGCGATTCTCAAGATCACCGGCAAGAGCTGGGAGTGGTCGCTGGCC
ACAGGCGCTGCCGTCGGAGTCCTGATCGTCATTGTCGGTATTTGTGTAGTGCTGGTAATGCCTAAATTCCAGAAGCTGCA
GGTGCTGACAGACAATCTGAACCGGGTAGCCCGGGAGAATCTAACAGGACTGCGCGTCATCCGCGCATATAATGCAGAGA
AGTATCAAGAGGAGAAATTCGGTGCCGCCAACAATGAGCTGACCCGGACTAACCTGTTCGCTAACAATGTATTATCGGCG
ATGATGCCGAGTATTACGCTGATCATGAGCGGCCTGAGCCTGGCGATTTACTGGATCGGCGCGGTCATGATTCAATCTGC
CGATGCCGGCGCCAAAATGGGTCTCTTCTCAGACATGATTGTCTTCTCTTCCTATGCCATGCAGGTCGTTATGGCCTTTA
TGATGCTGATCATCATCTTTATTCTGCTGCCGCGGGCCCATGTCTCCGCCAAGCGGATTAACGAGGTGCTGGATACTAAG
CCTAGCCTGACTGACGGTTCGCTCACCGCCTCCCCTTCCAGGCATGCAGGTGAAGTGGAATTCCGGAATGTCAGCTTTAA
ATACCCGGATGCCGAAGATTATGTGCTGAAGGACATCAGCTTTACAGCTAAAAAAGGCGAGACGGTAGCATTCATCGGTT
CTACAGGCTGTGGAAAAAGCACCGTTGTTAACCTGATCCCCCGCTTCTATGATGCTACCTCCGGTGAAATACTTGTCGGC
GGCGTTAATGTAAATCAATATGAGCAAAGTGCTCTGCGCAACAAGATGGGCTATGTCTCACAAAAAGCAGTCCTGTTCGG
CGGTACGGTTACCTCCAATATCGCCTTCGGTGATAACGGCCGTGACCTGAATTCAGATGTGGTTGATGCCGTCTATACTT
CACAGGCAGCTGATTTCGTCGAGAAAATGGACGGCAGCTACGATGCCCATATCGCCCAGGGCGGAACCAATCTTTCCGGC
GGACAAAAGCAGCGTCTGTCCATTGCCCGGGCCATCGCCCGCCGTCCGGAAATTCTGATCTTCGACGACTCCTTCTCGGC
GCTGGATTACAAGACAGACCGCAAGCTGCGCAGCGAGCTGAAGAAGGAATCCCGCGGCACAACGATGCTGATTGTGGCAC
AGCGCATTGGTACGATCAAGGATGCAGACAACATTATCGTCCTGGAAGCCGGACAAATCGCCGGTATGGGGACGCATGAT
GAACTGATGGAATCCTGCAGCATTTATCAGGAAATCGCCTATTCACAGCTGTCGAAGGAGGAGCTTGCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-293)

ABC transporter (ABC_tran)

(356-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.181

100

0.533

Multiple sequence alignment