Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NST84_RS14715 Genome accession   NZ_CP152002
Coordinates   3464744..3466504 (-) Length   586 a.a.
NCBI ID   WP_342566282.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R7-0345     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3459744..3471504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST84_RS14695 (NST84_14695) - 3460236..3460610 (+) 375 WP_342566278.1 hypothetical protein -
  NST84_RS14700 (NST84_14700) - 3460760..3461998 (+) 1239 WP_342566279.1 glycosyltransferase -
  NST84_RS14705 (NST84_14705) - 3461995..3463083 (+) 1089 WP_342566280.1 glycosyltransferase family 4 protein -
  NST84_RS14710 (NST84_14710) cls 3463244..3464686 (+) 1443 WP_342566281.1 cardiolipin synthase -
  NST84_RS14715 (NST84_14715) rcrQ 3464744..3466504 (-) 1761 WP_342566282.1 ABC transporter ATP-binding protein Regulator
  NST84_RS14720 (NST84_14720) rcrP 3466504..3468255 (-) 1752 WP_342566283.1 ABC transporter ATP-binding protein Regulator
  NST84_RS14725 (NST84_14725) - 3468370..3469446 (-) 1077 WP_342566284.1 HAMP domain-containing sensor histidine kinase -
  NST84_RS14730 (NST84_14730) - 3469443..3470117 (-) 675 WP_342566285.1 response regulator transcription factor -
  NST84_RS14735 (NST84_14735) - 3470273..3470440 (+) 168 WP_342566286.1 hypothetical protein -
  NST84_RS14740 (NST84_14740) - 3470542..3471177 (-) 636 WP_342566287.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64058.93 Da        Isoelectric Point: 6.5039

>NTDB_id=984363 NST84_RS14715 WP_342566282.1 3464744..3466504(-) (rcrQ) [Paenibacillus sp. FSL R7-0345]
MKKKTHQPGTWSRLLQYCRSHIPVILIAVISASAGTILTLLGPDQLSELTDLITAGIATSIDLDAVASIGFFLIFIYSLS
AVLSLGQGLIMSMVTQKVSKSLRKDLSHKMNRLPISYYNNSTTGDILSRVTNDVDTIGQALNQSVGTLVTAIALFVGSMI
MMFKTNVIMTFTAIAATIIGFGLMAIIMKKSQKYFQSQQEYLGKINGHVEEVYTGHTVVKAYNGEAQMRGAFDSLNQSLK
QSAFKAQFLSGLMMPLMTFIGNLGYVAVCVVGAVLAINGSISFGVIVAFIMYVRFFTQPLAQMAQAAQNLQAASAASKRV
FEFLDAGEMDNEEHKQTRLATADGHVTFEHVQFAYEGTDKLVIKDFSAEVHPGQKIAIVGPTGAGKTTLINLLIRFNELT
GGEIYIDGTPVSRLTRENIHDLFCMVLQDTWMFEGTVRENLVYNKTGVTDAEIEAACRSVGLHHFIQTLSNGYDTVLNDK
VNLSAGQKQQLTIARAMLKDAPMLILDEATSSVDTRTELLIQQAMDQLMEGRTSFVIAHRLSTIKNADVILVLKDGDILE
SGSHSELLAKNGFYADLYNSQFEQAS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=984363 NST84_RS14715 WP_342566282.1 3464744..3466504(-) (rcrQ) [Paenibacillus sp. FSL R7-0345]
ATGAAAAAGAAAACACACCAGCCGGGCACCTGGAGCCGGCTTCTCCAATATTGCCGGTCACATATTCCCGTCATCCTTAT
CGCAGTGATAAGCGCATCCGCAGGTACAATTCTTACCCTGCTTGGTCCTGACCAGCTCTCGGAGCTGACCGATCTGATCA
CTGCCGGCATCGCCACAAGCATTGATCTGGATGCCGTTGCTTCTATCGGATTCTTCCTGATTTTCATTTATTCGCTCAGC
GCTGTTCTGTCACTGGGACAAGGACTTATTATGTCAATGGTAACGCAAAAAGTGTCCAAAAGCCTGCGGAAAGACCTGTC
GCACAAAATGAATCGTCTGCCGATCTCATACTACAATAATTCTACAACCGGTGACATTCTGTCCCGGGTTACCAACGACG
TGGATACCATCGGGCAGGCGCTGAATCAGAGCGTCGGCACGCTGGTTACGGCAATCGCCCTGTTCGTCGGATCAATGATT
ATGATGTTTAAGACAAACGTAATCATGACTTTCACAGCGATTGCCGCTACCATAATCGGCTTTGGCCTGATGGCAATAAT
CATGAAGAAATCACAGAAATATTTCCAGAGCCAGCAGGAATATCTCGGGAAAATCAATGGACATGTCGAAGAAGTATATA
CCGGCCACACCGTTGTAAAAGCGTACAATGGTGAAGCGCAAATGCGCGGAGCCTTCGATTCTCTTAACCAGTCACTGAAG
CAAAGTGCTTTCAAAGCGCAGTTTCTGTCCGGACTGATGATGCCGCTGATGACCTTTATCGGAAATCTCGGATATGTGGC
TGTCTGTGTCGTCGGTGCTGTTCTGGCGATCAACGGGTCGATCTCCTTCGGCGTTATTGTCGCTTTCATTATGTATGTCC
GTTTCTTCACCCAGCCGCTTGCCCAAATGGCCCAGGCTGCACAGAACCTGCAGGCTGCTTCTGCCGCCAGCAAACGCGTA
TTTGAATTCCTGGATGCCGGGGAAATGGATAATGAGGAGCACAAGCAGACCAGGCTTGCTACCGCTGATGGTCATGTAAC
CTTTGAGCATGTGCAGTTCGCTTATGAGGGAACAGATAAGCTGGTGATCAAAGACTTCTCTGCCGAGGTACACCCCGGCC
AGAAAATTGCGATTGTCGGCCCGACCGGCGCAGGTAAAACCACGCTGATCAATCTGCTGATCCGCTTCAATGAGCTGACC
GGCGGGGAAATCTACATCGACGGCACACCGGTCAGCAGGCTGACCAGAGAGAACATTCATGATCTCTTCTGCATGGTCCT
ACAGGACACCTGGATGTTCGAGGGTACAGTAAGAGAAAATCTCGTCTACAACAAAACAGGCGTAACCGATGCTGAAATTG
AAGCGGCCTGCCGTTCCGTCGGCCTGCATCATTTCATTCAGACACTGAGTAACGGCTACGATACCGTCCTTAATGACAAG
GTAAATCTCTCTGCCGGCCAGAAACAGCAGCTCACGATCGCCCGGGCGATGCTCAAAGATGCACCAATGCTCATTCTCGA
TGAGGCAACCAGCTCGGTGGATACGCGGACTGAGCTGCTGATCCAGCAGGCGATGGATCAGCTGATGGAAGGCCGGACCT
CCTTCGTAATCGCCCACAGACTTTCGACCATCAAGAATGCCGATGTCATTCTGGTCCTGAAAGACGGCGATATTCTGGAG
AGCGGCAGCCACAGTGAATTGCTTGCCAAGAACGGTTTCTACGCGGACCTGTATAACAGCCAGTTTGAACAAGCCTCTTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(26-300)

ABC transporter (ABC_tran)

(364-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.672

97.782

0.544

Multiple sequence alignment