Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MKY11_RS10395 Genome accession   NZ_CP152000
Coordinates   2044891..2045526 (+) Length   211 a.a.
NCBI ID   WP_342502107.1    Uniprot ID   -
Organism   Bacillus sp. FSL W7-1085     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2039891..2050526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY11_RS10355 (MKY11_10355) - 2040055..2041173 (+) 1119 WP_024718533.1 NADH-dependent flavin oxidoreductase -
  MKY11_RS10360 (MKY11_10360) - 2041223..2041729 (-) 507 WP_008344623.1 PTS glucose transporter subunit IIA -
  MKY11_RS10365 (MKY11_10365) - 2041898..2042317 (+) 420 WP_007500867.1 Hsp20/alpha crystallin family protein -
  MKY11_RS10370 (MKY11_10370) - 2042339..2042791 (-) 453 WP_017359729.1 YppG family protein -
  MKY11_RS10375 (MKY11_10375) - 2042900..2043280 (-) 381 WP_234710322.1 YppE family protein -
  MKY11_RS10380 (MKY11_10380) - 2043330..2043563 (-) 234 WP_224558417.1 DUF5446 family protein -
  MKY11_RS10385 (MKY11_10385) sspM 2043760..2043864 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  MKY11_RS10390 (MKY11_10390) - 2043888..2044844 (-) 957 WP_342501393.1 DUF2515 domain-containing protein -
  MKY11_RS10395 (MKY11_10395) recU 2044891..2045526 (+) 636 WP_342502107.1 Holliday junction resolvase RecU Machinery gene
  MKY11_RS10400 (MKY11_10400) - 2045546..2048218 (+) 2673 WP_035702944.1 PBP1A family penicillin-binding protein -
  MKY11_RS10405 (MKY11_10405) - 2048255..2048764 (-) 510 WP_041507035.1 YpoC family protein -
  MKY11_RS10410 (MKY11_10410) nth 2048761..2049423 (-) 663 WP_008344602.1 endonuclease III -
  MKY11_RS10415 (MKY11_10415) - 2049441..2050145 (-) 705 WP_342501394.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24357.63 Da        Isoelectric Point: 9.7581

>NTDB_id=984294 MKY11_RS10395 WP_342502107.1 2044891..2045526(+) (recU) [Bacillus sp. FSL W7-1085]
MIRYPNGKSYQPIQQIGTKKRSSGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDRKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=984294 MKY11_RS10395 WP_342502107.1 2044891..2045526(+) (recU) [Bacillus sp. FSL W7-1085]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAAGCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGACGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGGAAGCAACATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

73.367

94.313

0.692

Multiple sequence alignment