Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | NYE21_RS13055 | Genome accession | NZ_CP151999 |
| Coordinates | 2529908..2530243 (+) | Length | 111 a.a. |
| NCBI ID | WP_006637528.1 | Uniprot ID | - |
| Organism | Bacillus sp. FSL K6-8391 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2524908..2535243
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NYE21_RS13035 (NYE21_13035) | gcvT | 2525340..2526434 (-) | 1095 | WP_003183436.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| NYE21_RS13040 (NYE21_13040) | - | 2527027..2528706 (+) | 1680 | WP_003183439.1 | SNF2-related protein | - |
| NYE21_RS13045 (NYE21_13045) | - | 2528713..2529507 (+) | 795 | WP_003183441.1 | YqhG family protein | - |
| NYE21_RS13050 (NYE21_13050) | sinI | 2529698..2529874 (+) | 177 | WP_003183444.1 | anti-repressor SinI family protein | Regulator |
| NYE21_RS13055 (NYE21_13055) | sinR | 2529908..2530243 (+) | 336 | WP_006637528.1 | helix-turn-helix domain-containing protein | Regulator |
| NYE21_RS13060 (NYE21_13060) | - | 2530348..2531142 (-) | 795 | WP_003183447.1 | TasA family protein | - |
| NYE21_RS13065 (NYE21_13065) | - | 2531216..2531800 (-) | 585 | WP_003183449.1 | signal peptidase I | - |
| NYE21_RS13070 (NYE21_13070) | tapA | 2531797..2532525 (-) | 729 | WP_003183451.1 | amyloid fiber anchoring/assembly protein TapA | - |
| NYE21_RS13075 (NYE21_13075) | - | 2532835..2533122 (+) | 288 | WP_223307118.1 | YqzG/YhdC family protein | - |
| NYE21_RS13080 (NYE21_13080) | - | 2533152..2533334 (-) | 183 | WP_003183456.1 | YqzE family protein | - |
| NYE21_RS13085 (NYE21_13085) | comGG | 2533423..2533788 (-) | 366 | WP_003183459.1 | competence type IV pilus minor pilin ComGG | - |
| NYE21_RS13090 (NYE21_13090) | comGF | 2533801..2534289 (-) | 489 | WP_011201694.1 | competence type IV pilus minor pilin ComGF | - |
| NYE21_RS13095 (NYE21_13095) | comGE | 2534198..2534545 (-) | 348 | WP_026699160.1 | competence type IV pilus minor pilin ComGE | - |
| NYE21_RS13100 (NYE21_13100) | comGD | 2534529..2534966 (-) | 438 | WP_026699159.1 | competence type IV pilus minor pilin ComGD | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12963.59 Da Isoelectric Point: 5.9495
>NTDB_id=984231 NYE21_RS13055 WP_006637528.1 2529908..2530243(+) (sinR) [Bacillus sp. FSL K6-8391]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE
Nucleotide
Download Length: 336 bp
>NTDB_id=984231 NYE21_RS13055 WP_006637528.1 2529908..2530243(+) (sinR) [Bacillus sp. FSL K6-8391]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCGATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCGATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
93.694 |
100 |
0.937 |