Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   NYE21_RS09905 Genome accession   NZ_CP151999
Coordinates   1939193..1939669 (+) Length   158 a.a.
NCBI ID   WP_075754538.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-8391     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1934193..1944669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE21_RS09880 (NYE21_09880) - 1935860..1936840 (+) 981 Protein_1899 abhydrolase domain-containing 18 -
  NYE21_RS09885 (NYE21_09885) - 1936918..1937139 (+) 222 WP_075754530.1 hypothetical protein -
  NYE21_RS09890 (NYE21_09890) - 1937242..1937838 (+) 597 WP_075754532.1 class I SAM-dependent methyltransferase -
  NYE21_RS09895 (NYE21_09895) - 1937944..1938423 (+) 480 WP_075754534.1 DUF4944 domain-containing protein -
  NYE21_RS09900 (NYE21_09900) - 1938457..1939056 (+) 600 WP_075754536.1 GNAT family N-acetyltransferase -
  NYE21_RS09905 (NYE21_09905) rok 1939193..1939669 (+) 477 WP_075754538.1 hypothetical protein Regulator
  NYE21_RS09910 (NYE21_09910) - 1939780..1939953 (+) 174 WP_164943117.1 hypothetical protein -
  NYE21_RS09915 (NYE21_09915) - 1940306..1940926 (-) 621 WP_075754540.1 hypothetical protein -
  NYE21_RS09920 (NYE21_09920) - 1941641..1942225 (+) 585 WP_075754542.1 TetR family transcriptional regulator -
  NYE21_RS09925 (NYE21_09925) - 1942306..1942638 (+) 333 WP_020451572.1 multidrug efflux SMR transporter -
  NYE21_RS09930 (NYE21_09930) - 1942641..1942958 (+) 318 WP_075754544.1 multidrug efflux SMR transporter -
  NYE21_RS09935 (NYE21_09935) speG 1942987..1943529 (+) 543 WP_020451574.1 spermidine N1-acetyltransferase -
  NYE21_RS09940 (NYE21_09940) - 1943568..1943924 (-) 357 WP_075754546.1 YxeA family protein -
  NYE21_RS09945 (NYE21_09945) - 1944139..1944537 (+) 399 WP_241660521.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18287.14 Da        Isoelectric Point: 9.8474

>NTDB_id=984225 NYE21_RS09905 WP_075754538.1 1939193..1939669(+) (rok) [Bacillus sp. FSL K6-8391]
MFDEREALRLRLEQLGDAEIQVMRELRKERQDIYSKLHELDREGDPAINKKSSLIDLASAAAEELKQSQIAADKHPPIKT
PSHTIFQSKTTIQREAALNILSRYEEGLKGIKLKTEIEKETGFPIKNMTTFMKSLMKHRPEIKKPARGHYILHKEKDL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=984225 NYE21_RS09905 WP_075754538.1 1939193..1939669(+) (rok) [Bacillus sp. FSL K6-8391]
ATGTTCGACGAAAGAGAAGCGTTGCGTTTGAGACTTGAACAGCTAGGTGATGCGGAGATTCAGGTGATGCGGGAATTGCG
AAAAGAACGACAGGACATTTATTCGAAGCTGCATGAATTGGATCGGGAGGGTGATCCCGCAATTAACAAAAAATCTTCAT
TAATCGACTTGGCAAGCGCTGCAGCAGAGGAATTAAAACAATCCCAAATTGCCGCTGACAAACATCCGCCCATCAAGACT
CCATCTCATACTATTTTCCAATCAAAAACAACCATACAACGTGAGGCTGCCTTAAACATTTTAAGCCGCTATGAAGAGGG
CTTGAAAGGCATTAAGCTTAAAACTGAAATCGAGAAAGAAACCGGCTTTCCGATTAAAAACATGACGACATTTATGAAGA
GCTTAATGAAACATCGCCCAGAAATTAAAAAACCTGCCCGCGGCCATTATATTCTGCATAAAGAAAAAGACCTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

44.505

100

0.513

Multiple sequence alignment