Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MKX67_RS16240 Genome accession   NZ_CP151998
Coordinates   3206942..3209341 (-) Length   799 a.a.
NCBI ID   WP_341096855.1    Uniprot ID   -
Organism   Cytobacillus sp. FSL W7-1323     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3201942..3214341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX67_RS16220 (MKX67_16220) - 3204749..3205825 (-) 1077 WP_342488457.1 AI-2E family transporter -
  MKX67_RS16225 (MKX67_16225) - 3205972..3206103 (-) 132 WP_095372467.1 DUF3918 family protein -
  MKX67_RS16230 (MKX67_16230) - 3206129..3206320 (-) 192 WP_342489282.1 hypothetical protein -
  MKX67_RS16235 (MKX67_16235) - 3206340..3206810 (-) 471 WP_341096849.1 PRC-barrel domain-containing protein -
  MKX67_RS16240 (MKX67_16240) recD2 3206942..3209341 (-) 2400 WP_341096855.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MKX67_RS16245 (MKX67_16245) - 3209384..3210037 (-) 654 WP_095372464.1 tetratricopeptide repeat protein -
  MKX67_RS16250 (MKX67_16250) mnmA 3210336..3211451 (-) 1116 WP_095372463.1 tRNA 2-thiouridine(34) synthase MnmA -
  MKX67_RS16255 (MKX67_16255) - 3211481..3212623 (-) 1143 WP_095372462.1 cysteine desulfurase family protein -
  MKX67_RS16260 (MKX67_16260) - 3212648..3213067 (-) 420 WP_095372461.1 Rrf2 family transcriptional regulator -
  MKX67_RS16265 (MKX67_16265) - 3213120..3213779 (-) 660 WP_307312797.1 YitT family protein -

Sequence

Protein


Download         Length: 799 a.a.        Molecular weight: 90180.13 Da        Isoelectric Point: 4.8344

>NTDB_id=984172 MKX67_RS16240 WP_341096855.1 3206942..3209341(-) (recD2) [Cytobacillus sp. FSL W7-1323]
MDEQNSLDLFAEQKTYVKGKHLVTIFHNESNLYTVLRIRVLETNAQYEEKEAVITGYIPKIHEEETYTFIGEWKEHPKFG
LQFHVEQYKKEMPQTKEGVVNYLSGDLFKGIGKKTAQSIVDELGENAINSILNNPSLLDGIPKLASEKAKVLYDTLVENQ
GIEQVMIHLNQLGFGPQLSMKIFQTYKDQAIDILQKKPYQLVEDIEGIGFHRADEIGQQVGMSGSHPDRIKAACLYVLDS
ESAQAGHVYAEAEELLPAVKKLLEEKATEVIPYEAISEAILKLGEERKVIAEGQQLYLPSLFFSEKGIVTNIKRILNQTE
FNEQFPESEFLLALGQLEERLSVQYAPSQKDAIQKALMSPMMILTGGPGTGKTTVIQGIVELYGELHGCSLNPKDYKKEE
PFPFLLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFDHHEENPLEGKILIVDETSMVDIWLANQLFKAIPEEMQVI
LVGDEDQLPSVGPGQVLRDLLLSERIPSVMLTDIYRQSEGSSIIELAHEMKKGRLPQNITQQQKDRSFFQCQPGQIGTVI
GQVVRNAKKKGYLAKDIQVLAPMYRGPAGIDRLNKMIQEIFNPNEDGSRKEIAFGDVVYRIGDKVLQLVNQPENHVYNGD
MGEIISIFYAKENTEKQDMVIVSFDGVEATYTKQDLNQITHAYCCSVHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAIT
RSKQFLILCGDEEALKMGIQRLDDQSRRSNLRLKLKDEIFEGETIEAVDESLTYEDYLMKVDPLIGMENITPYDFLEAD

Nucleotide


Download         Length: 2400 bp        

>NTDB_id=984172 MKX67_RS16240 WP_341096855.1 3206942..3209341(-) (recD2) [Cytobacillus sp. FSL W7-1323]
ATGGATGAGCAGAATTCTTTAGATTTATTTGCTGAACAAAAAACGTATGTAAAGGGCAAGCATCTTGTGACTATTTTCCA
TAATGAGAGTAATCTTTATACGGTTTTACGTATTCGGGTGCTAGAGACAAATGCACAATATGAAGAGAAAGAAGCGGTCA
TTACTGGCTACATACCGAAAATCCATGAAGAGGAGACCTATACATTTATAGGGGAATGGAAGGAACATCCAAAGTTTGGG
TTGCAATTCCATGTAGAGCAGTACAAGAAAGAAATGCCTCAAACAAAAGAAGGTGTCGTTAATTATTTATCAGGTGACCT
CTTTAAAGGAATTGGTAAGAAAACGGCACAAAGTATCGTGGACGAGCTTGGAGAAAATGCGATCAATAGCATTTTAAATA
ATCCTTCATTATTAGATGGGATACCAAAATTAGCAAGTGAAAAAGCGAAAGTTTTATACGACACACTTGTGGAGAATCAA
GGAATTGAACAAGTCATGATTCACCTCAATCAACTTGGTTTTGGTCCACAACTATCTATGAAGATTTTTCAAACATATAA
AGATCAAGCAATAGATATTTTGCAAAAAAAACCTTATCAACTCGTAGAGGATATTGAAGGGATTGGCTTCCATCGGGCAG
ATGAGATTGGACAACAAGTGGGAATGTCAGGTAGTCATCCTGACCGTATTAAAGCAGCATGTTTGTATGTGCTTGATAGT
GAAAGTGCACAGGCAGGTCACGTATATGCTGAAGCAGAAGAATTACTCCCTGCTGTCAAAAAACTATTAGAGGAAAAAGC
GACTGAGGTAATCCCTTACGAGGCGATTAGTGAAGCAATCTTAAAGCTCGGAGAAGAGAGAAAAGTGATTGCAGAAGGAC
AGCAGTTATATTTACCTTCTCTTTTCTTTTCTGAAAAGGGAATCGTTACAAATATCAAACGTATACTCAATCAAACGGAA
TTTAATGAACAGTTTCCTGAATCGGAATTCCTCCTTGCTTTGGGACAATTAGAAGAGCGACTTTCGGTACAGTATGCGCC
ATCTCAAAAAGATGCCATTCAAAAAGCGTTAATGTCGCCAATGATGATCTTAACTGGTGGTCCAGGTACGGGCAAAACAA
CGGTTATTCAAGGAATTGTTGAATTGTATGGTGAATTACATGGCTGTAGTTTAAATCCGAAAGACTATAAAAAAGAAGAG
CCTTTTCCTTTCTTATTAGCTGCACCTACTGGAAGAGCGGCGAAAAGAATGGCAGAATCTACAGGATTACCAGCTGTGAC
GATTCACAGATTGCTTGGTTGGAATGGAAGTGAGGGTTTTGACCATCATGAAGAAAACCCGCTTGAAGGGAAAATTCTTA
TTGTTGATGAAACTTCCATGGTTGATATATGGCTAGCCAATCAACTTTTTAAAGCGATCCCTGAAGAAATGCAAGTCATA
CTTGTTGGTGATGAAGATCAATTACCATCTGTGGGCCCAGGTCAAGTATTAAGAGATTTATTACTTTCTGAACGTATCCC
TTCGGTTATGTTGACAGATATTTATAGGCAATCGGAAGGCTCGTCAATTATTGAGTTAGCACATGAAATGAAAAAGGGAA
GATTGCCGCAAAATATTACTCAGCAACAAAAAGACCGTTCCTTTTTTCAATGCCAACCAGGTCAAATTGGCACGGTTATC
GGGCAAGTAGTGCGAAATGCAAAGAAAAAGGGGTATTTAGCAAAGGATATTCAAGTACTTGCACCGATGTATCGTGGTCC
TGCAGGTATTGATCGCCTTAATAAAATGATCCAAGAAATTTTCAACCCTAATGAAGATGGTAGTAGAAAGGAAATTGCTT
TTGGTGATGTTGTCTATCGCATTGGAGACAAGGTGTTGCAATTAGTCAATCAACCTGAAAACCACGTTTATAACGGTGAT
ATGGGTGAAATTATTTCCATATTTTATGCAAAAGAGAACACAGAGAAACAAGATATGGTTATTGTTTCTTTTGACGGAGT
GGAAGCAACGTATACAAAACAGGATTTAAATCAAATCACTCATGCCTATTGTTGTTCCGTTCATAAGTCACAGGGCAGTG
AGTTTCCGATTGTTATTCTTCCGGTCGTTAAAAGTTATTACCGGATGTTACGGAGGAATTTATTATATACTGCCATTACA
CGAAGCAAGCAGTTCCTTATATTATGCGGTGATGAAGAAGCGTTAAAAATGGGTATACAACGATTGGATGATCAATCGAG
GCGATCTAACTTACGATTGAAGTTAAAAGATGAAATCTTCGAAGGAGAGACCATTGAAGCTGTAGATGAATCATTAACAT
ATGAAGATTATTTGATGAAAGTCGACCCGTTGATAGGAATGGAAAATATCACACCTTATGATTTTTTAGAGGCTGATTAG

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-664)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.404

99.875

0.613

Multiple sequence alignment