Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MKX67_RS15380 Genome accession   NZ_CP151998
Coordinates   3048678..3050366 (-) Length   562 a.a.
NCBI ID   WP_095372620.1    Uniprot ID   -
Organism   Cytobacillus sp. FSL W7-1323     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3043678..3055366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX67_RS15365 (MKX67_15365) - 3045837..3046076 (+) 240 WP_095373649.1 DUF2627 domain-containing protein -
  MKX67_RS15370 (MKX67_15370) spo0A 3046153..3046947 (-) 795 WP_095372622.1 sporulation transcription factor Spo0A -
  MKX67_RS15375 (MKX67_15375) spoIVB 3047275..3048564 (-) 1290 WP_095372621.1 SpoIVB peptidase -
  MKX67_RS15380 (MKX67_15380) recN 3048678..3050366 (-) 1689 WP_095372620.1 DNA repair protein RecN Machinery gene
  MKX67_RS15385 (MKX67_15385) argR 3050384..3050833 (-) 450 WP_095372619.1 transcriptional regulator ArgR -
  MKX67_RS15390 (MKX67_15390) - 3051078..3051914 (-) 837 WP_307313730.1 TlyA family RNA methyltransferase -
  MKX67_RS15395 (MKX67_15395) dxs 3051919..3053811 (-) 1893 WP_307312939.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MKX67_RS15400 (MKX67_15400) - 3053930..3054820 (-) 891 WP_095372616.1 polyprenyl synthetase family protein -
  MKX67_RS15405 (MKX67_15405) - 3054826..3055059 (-) 234 WP_095372615.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 64003.31 Da        Isoelectric Point: 5.1129

>NTDB_id=984168 MKX67_RS15380 WP_095372620.1 3048678..3050366(-) (recN) [Cytobacillus sp. FSL W7-1323]
MLNEISIRNFAIIESITIAFNKGLTVLSGETGAGKSIIIDAVHLLVGGRGSSEYVRHGEEKAEIEGLFILDDEQHPCYKR
AQEFGIDIDEGMLILRRDISKSGKSVCRINGKLVTISILREIGSTLIDIHGQHEHQELMNESLHLPLLDQFGGTKIAKSR
QEYEEVYREYEQTMKRIKTLTENEQQMAHRLDLIQFQYEEITNANLKLNEDDALLEERNRLLNFEKMYEGVKISYNALQG
EQKGLDWISLAMNHLQQSAEVDEELVELQEVVANSFYQLEDTVAILRSKLDFMEFDPVRLNEIEERLNEINMLKRKYGPS
IEEILEYVAKIEEEIETLTNKETHIEHLLKQAKELQADLLVEGKELSELRRNAAERLTKMIHRELKALYMEKTVFEVHFI
TDKESFHKKGIDTVEFYLSTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIH
QVAIDSQVLCISHLPQVAAMADTHLFISKTLKAGRTKTTVKPLDDEEKIKEIGRMISGVEMTELTREHAKELLSLAKNVK
IP

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=984168 MKX67_RS15380 WP_095372620.1 3048678..3050366(-) (recN) [Cytobacillus sp. FSL W7-1323]
GTGTTAAATGAAATATCAATTAGAAACTTTGCTATTATCGAATCAATCACAATTGCCTTTAATAAAGGTCTAACTGTGCT
TTCAGGAGAAACAGGAGCAGGAAAATCAATTATTATTGACGCCGTTCACCTGCTTGTTGGTGGCAGGGGTTCTTCAGAGT
ATGTAAGACATGGTGAAGAGAAAGCTGAGATAGAGGGTTTATTCATATTAGATGATGAACAACATCCGTGTTACAAACGG
GCGCAAGAATTTGGTATAGATATCGATGAAGGAATGTTGATTCTGAGACGAGATATATCTAAATCAGGTAAAAGTGTCTG
TCGAATAAATGGAAAACTTGTAACCATTTCTATTCTTCGAGAAATTGGTAGTACTCTAATTGACATACATGGTCAACATG
AACACCAAGAATTAATGAATGAAAGTTTGCATTTGCCTTTATTAGATCAATTTGGTGGTACCAAAATCGCTAAAAGCAGA
CAAGAATACGAAGAGGTCTATAGAGAATACGAGCAAACAATGAAAAGAATCAAGACATTAACAGAAAATGAACAGCAAAT
GGCTCATCGCCTGGATCTTATTCAATTTCAATATGAAGAAATAACAAACGCCAATTTAAAATTGAATGAAGATGATGCAC
TTTTAGAAGAGCGAAACCGCTTACTTAATTTTGAGAAGATGTATGAAGGCGTAAAAATTAGCTATAATGCCTTGCAAGGA
GAACAAAAAGGGCTTGATTGGATTAGTTTAGCTATGAATCACCTTCAACAATCGGCAGAAGTTGATGAAGAGTTAGTTGA
GTTGCAAGAAGTTGTTGCCAACAGTTTTTATCAATTAGAGGACACGGTAGCTATTTTAAGGAGTAAATTAGATTTTATGG
AATTTGATCCTGTTCGATTGAATGAAATTGAAGAGCGATTAAATGAAATCAATATGCTCAAACGAAAATATGGACCATCA
ATAGAGGAAATATTGGAATATGTTGCAAAGATTGAGGAAGAAATTGAAACATTAACCAACAAAGAAACTCATATCGAACA
CTTGCTCAAGCAGGCTAAAGAATTACAAGCTGATTTACTTGTCGAAGGAAAGGAATTGAGTGAATTAAGAAGAAATGCTG
CGGAACGATTAACAAAAATGATTCATCGTGAATTAAAAGCACTTTATATGGAAAAGACTGTATTTGAGGTCCATTTTATT
ACGGATAAAGAAAGCTTTCATAAAAAAGGTATTGATACAGTCGAATTTTACTTATCCACTAACCCAGGAGAACCGTTAAA
ACCATTATCAAAAATTGCATCAGGTGGTGAACTATCCCGAATTATGCTTGCTTTAAAGAGTATCTTTTCTAAACATCAAG
GGGTAACATCTATTATTTTTGATGAAGTTGATACAGGGGTAAGCGGAAGAGTCGCACAAGCTATAGCCGAAAAAATTCAT
CAAGTAGCGATTGATTCGCAAGTTCTTTGCATTTCCCATTTGCCACAAGTAGCTGCAATGGCAGATACGCATTTATTTAT
TTCTAAAACACTCAAAGCTGGCCGTACAAAAACAACGGTAAAGCCGTTGGATGACGAGGAAAAGATTAAAGAAATTGGTC
GTATGATCTCTGGTGTGGAAATGACTGAACTGACAAGGGAGCATGCGAAGGAATTACTGAGCCTTGCCAAAAATGTAAAA
ATACCATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

58.711

100

0.6

Multiple sequence alignment