Detailed information    

insolico Bioinformatically predicted

Overview

Name   cipB   Type   Regulator
Locus tag   R8559_RS02880 Genome accession   NZ_AP026926
Coordinates   540660..540809 (+) Length   49 a.a.
NCBI ID   WP_001820573.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700119     
Function   indirect induction of ComX; activation of comRS system (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 538988..539793 540660..540809 flank 867


Gene organization within MGE regions


Location: 538988..540809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8559_RS02865 - 538988..539793 (+) 806 Protein_564 IS5 family transposase -
  R8559_RS02870 (PC0116_05660) blpM 539943..540197 (+) 255 WP_000379877.1 two-peptide bacteriocin subunit BlpM -
  R8559_RS02875 (PC0116_05670) blpN 540213..540416 (+) 204 WP_001099492.1 two-peptide bacteriocin subunit BlpN -
  R8559_RS02880 (PC0116_05680) cipB 540660..540809 (+) 150 WP_001820573.1 bacteriocin-like peptide BlpO Regulator

Sequence

Protein


Download         Length: 49 a.a.        Molecular weight: 5150.91 Da        Isoelectric Point: 3.9133

>NTDB_id=98413 R8559_RS02880 WP_001820573.1 540660..540809(+) (cipB) [Streptococcus pneumoniae strain PZ900700119]
MDTKMMSQFSVMDNEMLACVEGGDIDWGRKISCAAGVAYGAIDGCATTV

Nucleotide


Download         Length: 150 bp        

>NTDB_id=98413 R8559_RS02880 WP_001820573.1 540660..540809(+) (cipB) [Streptococcus pneumoniae strain PZ900700119]
ATGGATACAAAAATGATGTCACAATTTTCTGTTATGGATAATGAAATGCTTGCTTGCGTTGAAGGTGGAGATATTGATTG
GGGAAGAAAAATTAGTTGTGCAGCAGGGGTTGCATATGGCGCAATTGATGGGTGTGCAACAACGGTTTGA

Domains

Predicted by InterproScan.

Bacteriocin class II with double-glycine leader peptide (Bacteriocin_IIc)

(6-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cipB Streptococcus mutans UA159

51.02

100

0.51

Multiple sequence alignment